Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold199G41172 Striga asiatica HOM05D001789 ORTHO05D001755 5.3e-176 620.9 317 100.0
SGA_v2.0_scaffold36G14395 Striga asiatica HOM05D001789 ORTHO05D001755 2.0e-42 177.2 186 58.6
Dinv20290 Davidia involucrata HOM05D001789 ORTHO05D001755 8.2e-36 155.2 130 60.8
GSVIVG01036270001 Vitis vinifera HOM05D001789 ORTHO05D001755 5.0e-33 146.0 130 60.0
Aqoxy2G03554 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 3.6e-31 139.8 133 56.4
TAR365G0302 Trochodendron aralioides HOM05D001789 ORTHO05D001755 6.1e-31 139.0 130 54.6
Actinidia18365 Actinidia chinensis HOM05D001789 ORTHO05D001755 1.4e-30 137.9 130 56.2
Ciclev10028402m.g Citrus clementina HOM05D001789 ORTHO05D001755 2.3e-30 137.1 128 57.0
Lju50C34T11 Lonicera japonica HOM05D001789 ORTHO05D001755 3.0e-30 136.7 130 58.5
Cfa006403 Carpinus fangiana HOM05D001789 ORTHO05D001755 5.2e-30 136.0 130 54.6
CANSAT54G0997 Cannabis sativa HOM05D001789 ORTHO05D001755 1.2e-29 134.8 130 56.9
Gohir.D13G175000 Gossypium hirsutum HOM05D001789 ORTHO05D001755 1.2e-29 134.8 130 54.6
Gorai.013G200300 Gossypium raimondii HOM05D001789 ORTHO05D001755 1.2e-29 134.8 130 54.6
RcHm_v2.0_Chr3g0450651 Rosa chinensis HOM05D001789 ORTHO05D001755 1.2e-29 134.8 130 53.1
Prupe.6G344800 Prunus persica HOM05D001789 ORTHO05D001755 1.5e-29 134.4 130 53.1
Gohir.A13G169500 Gossypium hirsutum HOM05D001789 ORTHO05D001755 2.6e-29 133.7 130 54.6
Peaxi162Scf00282g00618 Petunia axillaris HOM05D001789 ORTHO05D001755 3.4e-29 133.3 132 56.1
Atru.chr2.837 Acer truncatum HOM05D001789 ORTHO05D001755 4.4e-29 132.9 130 55.4
SGA_v2.0_scaffold199G41171 Striga asiatica HOM05D001789 ORTHO05D403883 5.7e-29 132.5 73 93.2
MSTRG.20457 Avicennia marina HOM05D001789 ORTHO05D001755 7.5e-29 132.1 123 60.2
MD04G1226000 Malus domestica HOM05D001789 ORTHO05D001755 7.5e-29 132.1 130 54.6
vmacro13812 Vaccinium macrocarpon HOM05D001789 ORTHO05D001755 7.5e-29 132.1 130 54.6
Eucgr.H04321 Eucalyptus grandis HOM05D001789 ORTHO05D001755 9.8e-29 131.7 130 53.8
CSS0016190 Camellia sinensis var. sinensis HOM05D001789 ORTHO05D001755 1.3e-28 131.3 130 55.4
Lsat_1_v5_gn_2_64421 Lactuca sativa HOM05D001789 ORTHO05D001755 1.7e-28 131.0 134 52.2
COL.COLO4_15370 Corchorus olitorius HOM05D001789 ORTHO05D001755 2.2e-28 130.6 130 53.8
BraA01t04507Z Brassica rapa HOM05D001789 ORTHO05D001755 3.7e-28 129.8 128 54.7
ClCG02G016750 Citrullus lanatus HOM05D001789 ORTHO05D001755 3.7e-28 129.8 146 50.7
unitig_37.g12638 Utricularia gibba HOM05D001789 ORTHO05D001755 3.7e-28 129.8 130 54.6
Nn1g02587 Nelumbo nucifera HOM05D001789 ORTHO05D001755 6.3e-28 129.0 130 53.8
BcaC09g47780 Brassica carinata HOM05D001789 ORTHO05D001755 8.3e-28 128.6 128 53.9
EL10Ac4g09088 Beta vulgaris HOM05D001789 ORTHO05D001755 1.1e-27 128.3 133 55.6
BNapus_Darmor_BZH_scaffold_78p00990 Brassica napus HOM05D001789 ORTHO05D001755 1.4e-27 127.9 128 55.5
MELO3C004392.2 Cucumis melo HOM05D001789 ORTHO05D001755 1.4e-27 127.9 130 53.1
Manes.08G136000 Manihot esculenta HOM05D001789 ORTHO05D001755 1.4e-27 127.9 130 50.0
SalBow8G1668 Salvia bowleyana HOM05D001789 ORTHO05D001755 1.4e-27 127.9 130 55.4
CiPaw.07G068600 Carya illinoinensis HOM05D001789 ORTHO05D001755 1.8e-27 127.5 130 52.3
CsaV3_2G003990 Cucumis sativus L. HOM05D001789 ORTHO05D001755 4.1e-27 126.3 130 53.8
Nitab4.5_0006088g0040 Nicotiana tabacum HOM05D001789 ORTHO05D001755 5.4e-27 125.9 135 53.3
AL3G14790 Arabidopsis lyrata HOM05D001789 ORTHO05D001755 7.0e-27 125.6 128 53.1
Psat0s1144g0080 Pisum sativum HOM05D001789 ORTHO05D001755 7.0e-27 125.6 130 54.6
AUR62001052 Chenopodium quinoa HOM05D001789 ORTHO05D001755 9.1e-27 125.2 133 51.9
AUR62004900 Chenopodium quinoa HOM05D001789 ORTHO05D001755 9.1e-27 125.2 133 51.9
TWI56G1124 Tripterygium wilfordii HOM05D001789 ORTHO05D001755 9.1e-27 125.2 130 53.1
Thecc.05G281000 Theobroma cacao HOM05D001789 ORTHO05D001755 1.2e-26 124.8 130 52.3
Glyma.19G245700 Glycine max HOM05D001789 ORTHO05D001755 1.6e-26 124.4 130 50.8
AT3G04710 Arabidopsis thaliana HOM05D001789 ORTHO05D001755 2.7e-26 123.6 128 52.3
Thhalv10020698m.g Eutrema salsugineum HOM05D001789 ORTHO05D001755 2.7e-26 123.6 129 55.8
BcaB04g21349 Brassica carinata HOM05D001789 ORTHO05D001755 3.5e-26 123.2 128 52.3
Manes.09G151500 Manihot esculenta HOM05D001789 ORTHO05D001755 3.5e-26 123.2 130 50.0
Solyc01g097190.4 Solanum lycopersicum HOM05D001789 ORTHO05D001755 3.5e-26 123.2 130 49.2
Sopen01g040860 Solanum pennellii HOM05D001789 ORTHO05D001755 3.5e-26 123.2 130 49.2
Aa31LG5G15100 Aethionema arabicum HOM05D001789 ORTHO05D001755 4.5e-26 122.9 128 51.6
Cpa.g.sc617.3 Carica papaya HOM05D001789 ORTHO05D001755 5.9e-26 122.5 130 50.8
PSO384G1410 Papaver somniferum HOM05D001789 ORTHO05D001755 5.9e-26 122.5 130 51.5
Medtr7g115280 Medicago truncatula HOM05D001789 ORTHO05D001755 1.3e-25 121.3 131 50.4
Cc02_g30810 Coffea canephora HOM05D001789 ORTHO05D001755 1.7e-25 120.9 130 53.8
Phvul.006G102400 Phaseolus vulgaris HOM05D001789 ORTHO05D001755 2.3e-25 120.6 124 54.8
Nitab4.5_0009495g0030 Nicotiana tabacum HOM05D001789 ORTHO05D001755 2.9e-25 120.2 135 51.1
ECA238G2814 Erigeron canadensis HOM05D001789 ORTHO05D001755 5.0e-25 119.4 131 46.6
Migut.B01098 Erythranthe guttata HOM05D001789 ORTHO05D001755 5.0e-25 119.4 130 52.3
Carub.0003s0386 Capsella rubella HOM05D001789 ORTHO05D001755 6.5e-25 119.0 130 52.3
Potri.005G054800 Populus trichocarpa HOM05D001789 ORTHO05D001755 6.5e-25 119.0 130 50.0
CARHR078940 Cardamine hirsuta HOM05D001789 ORTHO05D001755 1.5e-24 117.9 122 54.9
Sabra05G0047600 Salix brachista HOM05D001789 ORTHO05D001755 1.9e-24 117.5 130 46.9
PSO339G5673 Papaver somniferum HOM05D001789 ORTHO05D001755 2.5e-24 117.1 193 40.9
A03p33800 Brassica napus HOM05D001789 ORTHO05D001755 9.5e-24 115.2 130 49.2
Haze_04374 Corylus avellana HOM05D001789 ORTHO05D001755 2.1e-23 114.0 106 58.5
Sp3g03550 Schrenkiella parvula HOM05D001789 ORTHO05D001755 2.1e-23 114.0 129 52.7
VMungo0540G0629 Vigna mungo HOM05D001789 ORTHO05D001755 2.1e-23 114.0 130 47.7
Rhsim05G0163200 Rhododendron simsii HOM05D001789 ORTHO05D001755 2.8e-23 113.6 103 59.2
BcaB04g19305 Brassica carinata HOM05D001789 ORTHO05D001755 3.6e-23 113.2 128 50.8
BcaC01g04353 Brassica carinata HOM05D001789 ORTHO05D001755 4.7e-23 112.8 128 48.4
PGR004G2017 Punica granatum HOM05D001789 ORTHO05D001755 4.7e-23 112.8 130 47.7
C03p41100 Brassica napus HOM05D001789 ORTHO05D001755 1.0e-22 111.7 128 49.2
Zm00001eb356200 Zea mays HOM05D001789 ORTHO05D001755 1.0e-22 111.7 130 50.0
Pp3c26_10740 Physcomitrium patens HOM05D001789 ORTHO05D001755 1.8e-22 110.9 129 46.5
CDE06G0784 Ceratophyllum demersum HOM05D001789 ORTHO05D001755 2.3e-22 110.5 125 51.2
Pp3c4_24490 Physcomitrium patens HOM05D001789 ORTHO05D001755 2.3e-22 110.5 129 46.5
PGSC0003DMG400019460 Solanum tuberosum HOM05D001789 ORTHO05D001755 3.0e-22 110.2 153 44.4
FvH4_6g02680 Fragaria vesca HOM05D001789 ORTHO05D001755 5.2e-22 109.4 130 43.1
FAN02G1989 Fragaria x ananassa HOM05D001789 ORTHO05D001755 5.2e-22 109.4 130 43.1
FAN09G2804 Fragaria x ananassa HOM05D001789 ORTHO05D001755 5.2e-22 109.4 130 43.1
Rhsim05G0163400 Rhododendron simsii HOM05D001789 ORTHO05D001755 1.2e-21 108.2 107 55.1
vmacro17118 Vaccinium macrocarpon HOM05D001789 ORTHO05D001755 1.2e-21 108.2 114 55.3
Lj1g0007033 Lotus japonicus HOM05D001789 ORTHO05D001755 2.0e-21 107.5 130 44.6
Rhsim05G0163300 Rhododendron simsii HOM05D001789 ORTHO05D001755 2.6e-21 107.1 101 56.4
THA.LOC104821668 Tarenaya hassleriana HOM05D001789 ORTHO05D001755 2.6e-21 107.1 128 49.2
Os05g0103600 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 7.5e-21 105.5 130 45.4
ATR0665G154 Amborella trichopoda HOM05D001789 ORTHO05D001755 9.8e-21 105.1 123 47.2
HPP92_009631 Vanilla planifolia HOM05D001789 ORTHO05D001755 3.7e-20 103.2 140 44.3
SEGI_21200 Sequoiadendron giganteum HOM05D001789 ORTHO05D001755 6.3e-20 102.4 128 43.8
Sopen01g040890 Solanum pennellii HOM05D001789 ORTHO05D001755 1.4e-19 101.3 130 46.2
Haze_04373 Corylus avellana HOM05D001789 ORTHO05D001755 1.2e-18 98.2 130 43.8
Ah.06g192110 Amaranthus hybridus HOM05D001789 ORTHO05D001755 2.0e-18 97.4 195 37.4
Peaxi162Scf00533g00068 Petunia axillaris HOM05D001789 ORTHO05D001755 3.8e-17 93.2 87 57.5
AagrBONN_evm.TU.Sc2ySwM_368.3405 Anthoceros agrestis HOM05D001789 ORTHO05D001755 5.0e-17 92.8 130 43.1
BraA03t12554Z Brassica rapa HOM05D001789 ORTHO05D001755 8.6e-17 92.0 101 51.5
Mapoly0028s0042 Marchantia polymorpha HOM05D001789 ORTHO05D001755 1.1e-16 91.7 138 38.4
HanXRQChr14g0446601 Helianthus annuus HOM05D001789 ORTHO05D001755 9.5e-16 88.6 132 36.4
Rhsim07G0074300 Rhododendron simsii HOM05D001789 ORTHO05D001755 1.6e-15 87.8 82 57.3
CAN.G134.77 Capsicum annuum HOM05D001789 ORTHO05D001755 3.6e-15 86.7 82 52.4
Glyma.03G247600 Glycine max HOM05D001789 ORTHO05D001755 4.0e-14 83.2 130 39.2
Potri.013G042300 Populus trichocarpa HOM05D001789 ORTHO05D001755 1.5e-13 81.3 130 39.2
PGSC0003DMG400019459 Solanum tuberosum HOM05D001789 ORTHO05D001755 2.6e-13 80.5 116 45.7
Ca_09427_v3 Cicer arietinum L. HOM05D001789 ORTHO05D001755 5.7e-13 79.3 82 50.0
Lalb_Chr18g0043931 Lupinus albus HOM05D001789 ORTHO05D001755 1.3e-12 78.2 130 37.7
Duzib128G1133 Durio zibethinus HOM05D001789 ORTHO05D001755 1.1e-11 75.1 130 36.2
Sed0022842 Sechium edule HOM05D001789 ORTHO05D001755 1.1e-11 75.1 130 35.4
CBR_g50831 Chara braunii HOM05D001789 ORTHO05D001755 9.2e-11 72.0 69 55.1
Zm00001eb210160 Zea mays HOM05D001789 ORTHO05D001755 1.6e-10 71.2 142 35.2
arahy.Tifrunner.gnm1.ann1.JN9GN2 Arachis hypogaea HOM05D001789 ORTHO05D001755 2.0e-10 70.9 154 35.1
DCAR_006649 Daucus carota HOM05D001789 ORTHO05D001755 5.9e-10 69.3 130 36.9
Os12g0636100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 7.8e-10 68.9 133 32.3
CAN.G134.83 Capsicum annuum HOM05D001789 ORTHO05D001755 1.7e-09 67.8 62 54.8
Sopen01g040880 Solanum pennellii HOM05D001789 ORTHO05D001755 5.0e-09 66.2 133 36.8
CAN.G134.82 Capsicum annuum HOM05D001789 ORTHO05D001755 1.1e-08 65.1 52 61.5
vmacro14863 Vaccinium macrocarpon HOM05D001789 ORTHO05D001755 1.1e-08 65.1 130 33.8
Nn1g02591 Nelumbo nucifera HOM05D001789 ORTHO05D001755 1.5e-08 64.7 122 35.2
Cc01_g18750 Coffea canephora HOM05D001789 ORTHO05D001755 1.9e-08 64.3 74 44.6
CSS0012748 Camellia sinensis var. sinensis HOM05D001789 ORTHO05D001755 4.3e-08 63.2 123 35.0
Rhsim01G0268800 Rhododendron simsii HOM05D001789 ORTHO05D001755 7.3e-08 62.4 130 31.5
PSO832G3911 Papaver somniferum HOM05D001789 ORTHO05D001755 9.5e-08 62.0 117 33.3
BcaC03g16286 Brassica carinata HOM05D001789 ORTHO05D001755 2.1e-07 60.8 118 39.8
Sc15g0002530 Simmondsia chinensis HOM05D001789 ORTHO05D001755 2.1e-07 60.8 86 40.7
Os02g0491900 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 3.6e-07 60.1 152 30.3
Os09g0124800 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 3.6e-07 60.1 125 32.8
Rhsim01G0268600 Rhododendron simsii HOM05D001789 ORTHO05D001755 4.7e-07 59.7 126 36.5
Os03g0680300 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 6.2e-07 59.3 131 31.3
Os09g0123500 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 6.2e-07 59.3 131 32.8
Dinv34576 Davidia involucrata HOM05D001789 ORTHO05D010416 8.0e-07 58.9 137 32.8
TPR.G1004 Trifolium pratense HOM05D001789 ORTHO05D001755 8.0e-07 58.9 39 69.2
SGA_v2.0_scaffold199G41191 Striga asiatica HOM05D001664 ORTHO05D406168 1.1e-06 58.5 91 37.4
Lj2A1158T42 Lonicera japonica HOM05D001789 ORTHO05D001755 1.4e-06 58.2 141 26.2
PSO339G6309 Papaver somniferum HOM05D001789 ORTHO05D001755 1.4e-06 58.2 122 32.0
PSO384G0184 Papaver somniferum HOM05D001789 ORTHO05D001755 1.4e-06 58.2 117 33.3
Rhsim01G0268700 Rhododendron simsii HOM05D001789 ORTHO05D001755 1.4e-06 58.2 130 30.0
PSO210G2423 Papaver somniferum HOM05D001789 ORTHO05D001755 2.3e-06 57.4 117 33.3
arahy.Tifrunner.gnm1.ann1.K1HEIP Arachis hypogaea HOM05D001789 ORTHO05D001755 3.1e-06 57.0 122 36.9
Zm00001eb031110 Zea mays HOM05D001789 ORTHO05D001755 4.0e-06 56.6 131 31.3
COL.COLO4_08283 Corchorus olitorius HOM05D001789 ORTHO05D001755 5.2e-06 56.2 123 31.7
Os03g0680400 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 5.2e-06 56.2 130 30.0
QL12p018052 Quercus lobata HOM05D001789 ORTHO05D001755 5.2e-06 56.2 70 42.9
Os02g0493050 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 6.8e-06 55.8 124 29.0
PSO384G2359 Papaver somniferum HOM05D001789 ORTHO05D001755 6.8e-06 55.8 134 32.1
Manes.05G085400 Manihot esculenta HOM05D001789 ORTHO05D001755 8.9e-06 55.5 123 31.7


User provided reference genes

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