Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold199G41163 Striga asiatica HOM05D004321 ORTHO05D004889 1.9e-80 302.4 147 100.0
MD11G1143400 Malus domestica HOM05D004321 ORTHO05D004889 1.5e-19 100.1 55 76.4
Sc12g0001610 Simmondsia chinensis HOM05D004321 ORTHO05D004889 3.6e-18 95.5 63 69.8
MBI14_g11678_MAGBIO Magnolia biondii HOM05D004321 ORTHO05D004889 4.7e-18 95.1 71 63.4
Lalb_Chr24g0394261 Lupinus albus HOM05D004321 ORTHO05D004889 3.0e-17 92.4 46 87.0
SGA_v2.0_scaffold104G30152 Striga asiatica HOM05D004321 ORTHO05D004889 3.0e-17 92.4 40 100.0
DCAR_015188 Daucus carota HOM05D004321 ORTHO05D004889 1.2e-16 90.5 40 95.0
DCAR_027656 Daucus carota HOM05D004321 ORTHO05D004889 1.2e-16 90.5 40 95.0
Atru.chr12.498 Acer truncatum HOM05D004321 ORTHO05D004889 2.0e-16 89.7 40 95.0
Prupe.2G232300 Prunus persica HOM05D004321 ORTHO05D004889 2.0e-16 89.7 40 92.5
Ciclev10013313m.g Citrus clementina HOM05D004321 ORTHO05D004889 2.6e-16 89.4 40 92.5
Prupe.6G081200 Prunus persica HOM05D004321 ORTHO05D004889 2.6e-16 89.4 40 90.0
RcHm_v2.0_Chr5g0063751 Rosa chinensis HOM05D004321 ORTHO05D004889 2.6e-16 89.4 40 90.0
Ciclev10033281m.g Citrus clementina HOM05D004321 ORTHO05D004889 3.4e-16 89.0 40 90.0
Migut.D00865 Erythranthe guttata HOM05D004321 ORTHO05D004889 3.4e-16 89.0 40 95.0
Migut.H00021 Erythranthe guttata HOM05D004321 ORTHO05D004889 3.4e-16 89.0 40 95.0
Phvul.011G067300 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 3.4e-16 89.0 40 95.0
Potri.008G053000 Populus trichocarpa HOM05D004321 ORTHO05D004889 3.4e-16 89.0 40 92.5
Hund04986 Selenicereus undatus HOM05D004321 ORTHO05D004889 3.4e-16 89.0 39 94.9
MD03G1096900 Malus domestica HOM05D004321 ORTHO05D004889 4.4e-16 88.6 40 87.5
unitig_37.g12533 Utricularia gibba HOM05D000061 ORTHO05D003487 4.4e-16 88.6 40 92.5
CiPaw.14G070600 Carya illinoinensis HOM05D004321 ORTHO05D004889 7.5e-16 87.8 40 92.5
FvH4_3g35530 Fragaria vesca HOM05D004321 ORTHO05D004889 7.5e-16 87.8 40 90.0
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 7.5e-16 87.8 40 90.0
FAN16G3546 Fragaria x ananassa HOM05D004321 ORTHO05D004889 7.5e-16 87.8 40 90.0
MD01G1124900 Malus domestica HOM05D004321 ORTHO05D004889 9.8e-16 87.4 40 90.0
Sabra08G0038100 Salix brachista HOM05D004321 ORTHO05D004889 9.8e-16 87.4 48 79.2
Hund04987 Selenicereus undatus HOM05D004321 ORTHO05D004889 9.8e-16 87.4 39 92.3
TAR633G0306 Trochodendron aralioides HOM05D004321 ORTHO05D004889 9.8e-16 87.4 64 64.1
FAN21G2447 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.3e-15 87.0 40 87.5
Glyma.11G143200 Glycine max HOM05D004321 ORTHO05D004889 1.3e-15 87.0 40 92.5
Glyma.12G066300 Glycine max HOM05D004321 ORTHO05D004889 1.3e-15 87.0 40 92.5
CiPaw.13G097400 Carya illinoinensis HOM05D004321 ORTHO05D004889 1.7e-15 86.7 40 90.0
HanXRQChr05g0132661 Helianthus annuus HOM05D004321 ORTHO05D004889 1.7e-15 86.7 40 92.5
Hma1.2p1_0624F.1_g191410 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 1.7e-15 86.7 40 87.5
Hma1.2p1_1736F.1_g299920 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 1.7e-15 86.7 40 87.5
Medtr2g096370 Medicago truncatula HOM05D004321 ORTHO05D004889 1.7e-15 86.7 40 90.0
EL10Ac7g15980 Beta vulgaris HOM05D004321 ORTHO05D004889 2.2e-15 86.3 39 92.3
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.2e-15 86.3 40 87.5
Lalb_Chr14g0374991 Lupinus albus HOM05D004321 ORTHO05D004889 2.2e-15 86.3 40 92.5
Ca_19194_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.8e-15 85.9 40 90.0
Lalb_Chr01g0003821 Lupinus albus HOM05D004321 ORTHO05D004889 2.8e-15 85.9 40 90.0
Lalb_Chr03g0026871 Lupinus albus HOM05D004321 ORTHO05D004889 2.8e-15 85.9 40 90.0
Nn2g12809 Nelumbo nucifera HOM05D004321 ORTHO05D004889 2.8e-15 85.9 40 87.5
Psat0s128g0040 Pisum sativum HOM05D004321 ORTHO05D004889 2.8e-15 85.9 40 87.5
Psat7g219560 Pisum sativum HOM05D004321 ORTHO05D004889 2.8e-15 85.9 40 87.5
TWI75G1213 Tripterygium wilfordii HOM05D004321 ORTHO05D004889 2.8e-15 85.9 40 87.5
TAR636G2028 Trochodendron aralioides HOM05D004321 ORTHO05D004889 2.8e-15 85.9 40 90.0
Atru.chr8.1939 Acer truncatum HOM05D004321 ORTHO05D004889 3.7e-15 85.5 40 87.5
QL01p032862 Quercus lobata HOM05D004321 ORTHO05D004889 3.7e-15 85.5 40 90.0
Solyc11g005050.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 3.7e-15 85.5 40 90.0
Haze_24057 Corylus avellana HOM05D004321 ORTHO05D004889 4.9e-15 85.1 41 90.2
Medtr4g063080 Medicago truncatula HOM05D004321 ORTHO05D004889 4.9e-15 85.1 40 87.5
CSS0047088 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 6.3e-15 84.7 40 85.0
CANSAT54G0658 Cannabis sativa HOM05D004321 ORTHO05D004889 6.3e-15 84.7 40 87.5
Potri.010G207600 Populus trichocarpa HOM05D004321 ORTHO05D004889 6.3e-15 84.7 40 85.0
Ca_01346_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 8.3e-15 84.3 40 87.5
Ca_31212_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 8.3e-15 84.3 40 87.5
HanXRQChr02g0044521 Helianthus annuus HOM05D004321 ORTHO05D004889 8.3e-15 84.3 40 90.0
Lsat_1_v5_gn_5_168880 Lactuca sativa HOM05D004321 ORTHO05D004889 8.3e-15 84.3 40 90.0
SalBow1G1058 Salvia bowleyana HOM05D004321 ORTHO05D004889 8.3e-15 84.3 40 87.5
SalBow1G8509 Salvia bowleyana HOM05D004321 ORTHO05D004889 8.3e-15 84.3 40 87.5
VMungo0720G0686 Vigna mungo HOM05D004321 ORTHO05D004889 8.3e-15 84.3 41 87.8
MSTRG.15649 Avicennia marina HOM05D004321 ORTHO05D004889 1.1e-14 84.0 40 87.5
Nitab4.5_0000322g0010 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.1e-14 84.0 40 90.0
Nitab4.5_0001168g0080 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.1e-14 84.0 40 87.5
Nitab4.5_0002045g0030 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.1e-14 84.0 40 87.5
Nitab4.5_0003240g0020 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.1e-14 84.0 40 90.0
PGSC0003DMG402006052 Solanum tuberosum HOM05D004321 ORTHO05D004889 1.1e-14 84.0 40 87.5
TAR369G0439 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.1e-14 84.0 40 85.0
CAN.G531.3 Capsicum annuum HOM05D004321 ORTHO05D004889 1.4e-14 83.6 40 85.0
Manes.04G032700 Manihot esculenta HOM05D004321 ORTHO05D004889 1.4e-14 83.6 39 94.9
Oeu031979.1 Olea europaea HOM05D004321 ORTHO05D004889 1.4e-14 83.6 40 90.0
Solyc06g060080.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 1.4e-14 83.6 40 85.0
PGSC0003DMG400011781 Solanum tuberosum HOM05D004321 ORTHO05D004889 1.4e-14 83.6 40 85.0
HPP92_018999 Vanilla planifolia HOM05D004321 ORTHO05D004889 1.4e-14 83.6 40 85.0
Cc01_g12570 Coffea canephora HOM05D004321 ORTHO05D004889 1.8e-14 83.2 40 85.0
HanXRQChr05g0143771 Helianthus annuus HOM05D004321 ORTHO05D004889 1.8e-14 83.2 40 90.0
Lj3g0011964 Lotus japonicus HOM05D004321 ORTHO05D004889 1.8e-14 83.2 40 87.5
RcHm_v2.0_Chr7g0223231 Rosa chinensis HOM05D004321 ORTHO05D004889 1.8e-14 83.2 42 81.0
ATR0582G115 Amborella trichopoda HOM05D004321 ORTHO05D004889 2.4e-14 82.8 40 80.0
CSS0020614 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 2.4e-14 82.8 40 85.0
CSS0036330 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 2.4e-14 82.8 40 85.0
Phvul.L002443 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 3.1e-14 82.4 40 87.5
vmacro20132 Vaccinium macrocarpon HOM05D004321 ORTHO05D004889 3.1e-14 82.4 40 82.5
Ah.15g096870 Amaranthus hybridus HOM05D004321 ORTHO05D004889 4.1e-14 82.0 39 87.2
Ah.15g096900 Amaranthus hybridus HOM05D004321 ORTHO05D004889 4.1e-14 82.0 39 87.2
CAN.G526.11 Capsicum annuum HOM05D004321 ORTHO05D004889 4.1e-14 82.0 40 82.5
ClCG04G008340 Citrullus lanatus HOM05D004321 ORTHO05D004889 5.4e-14 81.6 40 82.5
Cc02_g08100 Coffea canephora HOM05D004321 ORTHO05D004889 5.4e-14 81.6 40 87.5
Thecc.09G325400 Theobroma cacao HOM05D004321 ORTHO05D004889 5.4e-14 81.6 39 89.7
Glyma.13G333000 Glycine max HOM05D004321 ORTHO05D004889 7.0e-14 81.3 40 85.0
PGR142G1540 Punica granatum HOM05D004321 ORTHO05D004889 7.0e-14 81.3 40 85.0
RcHm_v2.0_Chr1g0360701 Rosa chinensis HOM05D004321 ORTHO05D004889 7.0e-14 81.3 41 80.5
Sed0023983 Sechium edule HOM05D004321 ORTHO05D004889 7.0e-14 81.3 40 82.5
Glyma.15G041300 Glycine max HOM05D004321 ORTHO05D004889 9.2e-14 80.9 40 82.5
Cpa.g.sc190.10 Carica papaya HOM05D004321 ORTHO05D004889 1.2e-13 80.5 40 80.0
COL.COLO4_18474 Corchorus olitorius HOM05D004321 ORTHO05D004889 1.2e-13 80.5 39 84.6
CsaV3_4G024800 Cucumis sativus L. HOM05D004321 ORTHO05D004889 2.0e-13 79.7 40 77.5
Gohir.A05G097300 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.0e-13 79.7 39 89.7
Gohir.A05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.0e-13 79.7 39 89.7
Gohir.D03G128000 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.0e-13 79.7 39 89.7
Gohir.D05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.0e-13 79.7 39 89.7
Gohir.D05G097500 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.0e-13 79.7 39 89.7
Gorai.003G134700 Gossypium raimondii HOM05D004321 ORTHO05D004889 2.0e-13 79.7 39 89.7
Gorai.009G101000 Gossypium raimondii HOM05D004321 ORTHO05D004889 2.0e-13 79.7 39 89.7
Gorai.009G101100 Gossypium raimondii HOM05D004321 ORTHO05D004889 2.0e-13 79.7 39 89.7
Oeu033243.1 Olea europaea HOM05D004321 ORTHO05D004889 2.0e-13 79.7 40 82.5
Sed0004580 Sechium edule HOM05D004321 ORTHO05D004889 2.0e-13 79.7 40 80.0
CAN.G711.6 Capsicum annuum HOM05D004321 ORTHO05D004889 3.5e-13 79.0 40 80.0
Manes.11G132700 Manihot esculenta HOM05D004321 ORTHO05D004889 3.5e-13 79.0 39 87.2
Gohir.A03G040001 Gossypium hirsutum HOM05D004321 ORTHO05D004889 4.5e-13 78.6 39 87.2
THA.LOC104814874 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 4.5e-13 78.6 40 82.5
Aqoxy2G02059 Aquilegia oxysepala HOM05D004321 ORTHO05D004889 5.9e-13 78.2 40 80.0
MELO3C003114.2 Cucumis melo HOM05D004321 ORTHO05D004889 5.9e-13 78.2 40 77.5
THA.LOC109116048 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 5.9e-13 78.2 40 80.0
Aa31sc23G280 Aethionema arabicum HOM05D004321 ORTHO05D004889 1.7e-12 76.6 41 78.0
HanXRQChr05g0129691 Helianthus annuus HOM05D004321 ORTHO05D004889 2.3e-12 76.3 35 88.6
PSO339G6107 Papaver somniferum HOM05D004321 ORTHO05D004889 2.3e-12 76.3 53 67.9
RcHm_v2.0_Chr1g0340881 Rosa chinensis HOM05D004321 ORTHO05D004889 2.3e-12 76.3 41 80.5
RcHm_v2.0_Chr1g0367621 Rosa chinensis HOM05D004321 ORTHO05D004889 2.3e-12 76.3 41 80.5
RcHm_v2.0_Chr6g0265721 Rosa chinensis HOM05D004321 ORTHO05D004889 2.3e-12 76.3 41 80.5
arahy.Tifrunner.gnm1.ann1.CZHF5K Arachis hypogaea HOM05D004321 ORTHO05D004889 3.8e-12 75.5 40 80.0
arahy.Tifrunner.gnm1.ann1.NFV9ZK Arachis hypogaea HOM05D004321 ORTHO05D004889 3.8e-12 75.5 40 80.0
CARHR273120 Cardamine hirsuta HOM05D004321 ORTHO05D004889 3.8e-12 75.5 40 77.5
AL5G25260 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 6.6e-12 74.7 40 77.5
AL8G36130 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 6.6e-12 74.7 40 77.5
AT3G46430 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 6.6e-12 74.7 40 77.5
AT5G59613 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 6.6e-12 74.7 40 77.5
CARHR154850 Cardamine hirsuta HOM05D004321 ORTHO05D004889 6.6e-12 74.7 40 77.5
Thhalv10015813m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 6.6e-12 74.7 40 77.5
Aa31LG4G15480 Aethionema arabicum HOM05D004321 ORTHO05D004889 8.6e-12 74.3 40 77.5
BcaB01g04562 Brassica carinata HOM05D004321 ORTHO05D004889 8.6e-12 74.3 40 75.0
A02p07010 Brassica napus HOM05D004321 ORTHO05D004889 8.6e-12 74.3 40 75.0
BraA02t05781Z Brassica rapa HOM05D004321 ORTHO05D004889 8.6e-12 74.3 40 75.0
RcHm_v2.0_Chr3g0463581 Rosa chinensis HOM05D004321 ORTHO05D004889 1.1e-11 73.9 41 78.0
BcaB08g36235 Brassica carinata HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
BcaC01g06508 Brassica carinata HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
BcaC03g13996 Brassica carinata HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
BcaC04g19749 Brassica carinata HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
A03p11570 Brassica napus HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
A10p16870 Brassica napus HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
C02p12350 Brassica napus HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
C03p13450 Brassica napus HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
C09p52020 Brassica napus HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
BolC2t07335H Brassica oleracea HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
BolC3t13802H Brassica oleracea HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
BolC9t58064H Brassica oleracea HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
BraA03t10470Z Brassica rapa HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
BraA10t43766Z Brassica rapa HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
Carub.0005s1223 Capsella rubella HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
Carub.0008s2029 Capsella rubella HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
Sp5g15250 Schrenkiella parvula HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
Sp6g21320 Schrenkiella parvula HOM05D004321 ORTHO05D004889 1.9e-11 73.2 40 75.0
Zm00001eb355680 Zea mays HOM05D004321 ORTHO05D004889 1.9e-11 73.2 56 58.9
RcHm_v2.0_Chr2g0162431 Rosa chinensis HOM05D004321 ORTHO05D004889 2.5e-11 72.8 41 78.0
Thhalv10003016m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 3.3e-11 72.4 40 75.0
Peaxi162Scf01003g00014 Petunia axillaris HOM05D004321 ORTHO05D004889 3.3e-11 72.4 40 77.5
BcaB08g36233 Brassica carinata HOM05D004321 ORTHO05D004889 4.3e-11 72.0 40 72.5
Os03g0606200 Oryza sativa ssp. japonica HOM05D004321 ORTHO05D004889 4.3e-11 72.0 38 76.3
CSS0037228 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 6.1e-10 68.2 31 83.9
CSS0040757 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 6.1e-10 68.2 31 83.9
CSS0027128 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 8.0e-10 67.8 42 66.7
Zm00001eb022520 Zea mays HOM05D003081 ORTHO05D004889 8.9e-09 64.3 40 65.0
Zm00001eb120950 Zea mays HOM05D004321 ORTHO05D004889 8.9e-09 64.3 40 65.0
RcHm_v2.0_Chr7g0198591 Rosa chinensis HOM05D004321 ORTHO05D004889 1.7e-07 60.1 29 82.8


User provided reference genes

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