Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 0.0e+00 1099.0 550 100.0
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.5e-231 806.2 554 74.4
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.7e-230 802.7 554 74.2
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 5.5e-229 797.7 553 73.4
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 6.1e-220 767.7 556 71.6
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.4e-219 766.5 555 71.9
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 3.9e-219 765.0 554 71.1
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 6.7e-219 764.2 554 71.3
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 4.4e-218 761.5 552 71.0
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 5.7e-218 761.1 548 70.8
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 9.7e-218 760.4 549 71.0
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 7.0e-216 754.2 561 69.3
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 1.9e-213 746.1 559 68.7
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.2e-213 745.3 549 71.6
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 2.1e-212 742.7 552 67.9
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 2.7e-212 742.3 546 69.8
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 8.0e-212 740.7 558 68.1
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 6.7e-211 737.6 550 70.7
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 1.2e-210 736.9 550 69.6
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 3.3e-210 735.3 555 68.1
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 7.5e-210 734.2 553 69.8
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 2.4e-208 729.2 553 68.0
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 5.3e-208 728.0 555 68.6
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 5.3e-208 728.0 549 68.7
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 9.1e-208 727.2 552 67.9
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 2.7e-207 725.7 551 68.1
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.7e-207 725.7 551 67.3
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 3.5e-207 725.3 552 67.8
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 7.7e-207 724.2 553 67.5
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 2.9e-206 722.2 552 68.1
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.9e-206 722.2 555 67.2
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 3.8e-206 721.8 549 68.7
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.0e-206 721.5 547 67.6
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 3.2e-205 718.8 550 68.0
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 3.2e-205 718.8 549 67.9
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 4.2e-205 718.4 544 68.6
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 4.2e-205 718.4 553 67.3
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 4.2e-205 718.4 551 68.1
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 5.5e-205 718.0 550 67.3
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 9.4e-205 717.2 550 67.5
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 2.1e-204 716.1 551 67.2
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 3.6e-204 715.3 528 69.9
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 4.7e-204 714.9 549 66.3
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 8.0e-204 714.1 553 67.1
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 8.0e-204 714.1 559 67.3
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 1.0e-203 713.8 547 67.5
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 5.2e-203 711.4 547 67.5
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 8.8e-203 710.7 549 66.1
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 1.5e-202 709.9 548 67.2
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 4.4e-202 708.4 549 65.9
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 7.5e-202 707.6 550 66.2
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.7e-201 706.4 555 65.9
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 2.2e-201 706.1 550 65.6
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 2.8e-201 705.7 551 67.2
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 2.4e-200 702.6 554 66.1
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 3.1e-200 702.2 552 66.7
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 4.1e-200 701.8 551 66.4
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 9.1e-200 700.7 517 69.8
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 9.1e-200 700.7 554 65.7
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 1.6e-199 699.9 548 64.4
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 2.0e-199 699.5 559 65.7
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 7.7e-199 697.6 557 64.8
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.0e-198 697.2 554 65.5
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 1.3e-198 696.8 557 64.5
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 1.3e-198 696.8 557 64.5
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.3e-198 696.8 540 67.0
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 2.3e-198 696.0 549 65.4
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 2.9e-198 695.7 559 65.5
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 5.0e-198 694.9 558 64.5
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 6.5e-198 694.5 609 61.7
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 1.9e-197 693.0 572 63.5
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 2.5e-197 692.6 557 65.0
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 3.3e-197 692.2 581 64.7
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 5.5e-197 691.4 517 69.1
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 6.1e-196 688.0 551 65.7
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 6.1e-196 688.0 555 64.9
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 6.1e-196 688.0 557 64.6
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 2.0e-194 682.9 547 65.8
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.4e-194 681.8 542 65.5
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.1e-192 675.6 512 67.8
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 7.0e-192 674.5 544 64.2
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 4.5e-191 671.8 545 64.0
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 7.8e-191 671.0 553 63.3
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.5e-189 666.8 513 66.3
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.9e-189 666.4 546 64.5
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 2.1e-188 662.9 503 67.2
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 2.3e-187 659.4 542 63.8
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 5.2e-187 658.3 571 61.1
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 4.9e-185 651.7 545 62.8
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 6.4e-185 651.4 553 62.4
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.1e-184 650.6 548 62.2
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 3.5e-175 619.0 557 59.2
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 8.6e-174 614.4 518 63.3
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 2.9e-169 599.4 555 59.1
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 8.3e-169 597.8 592 57.1
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 4.6e-167 592.0 571 56.4
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 1.1e-160 570.9 462 64.3
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 7.8e-159 564.7 434 67.1
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 6.9e-155 551.6 433 65.1
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.4e-123 446.8 522 49.2
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 4.6e-119 432.6 351 63.5
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.4e-112 411.0 558 42.1
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 1.2e-111 407.9 556 45.5
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.0e-110 404.8 586 40.6
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 1.3e-105 387.9 556 41.0
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 5.7e-101 372.5 582 39.3
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.8e-99 367.5 289 67.8
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 2.0e-98 364.0 311 60.8
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 2.5e-96 357.1 318 58.8
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 9.4e-96 355.1 288 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 3.6e-95 353.2 572 37.4
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.7e-92 344.4 357 54.1
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 1.5e-80 304.7 428 41.6
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 5.0e-73 279.6 338 47.3
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 2.5e-72 277.3 641 32.0
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 3.6e-71 273.5 183 74.9
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.6e-61 240.7 220 60.9
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.6e-55 221.5 162 67.9
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 4.1e-51 206.8 152 66.4
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 7.1e-51 206.1 292 43.8
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 2.7e-50 204.1 175 61.1
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 5.2e-46 189.9 731 25.2
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.1e-43 182.2 127 69.3
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.0e-37 161.4 110 74.5
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 2.5e-32 144.4 109 69.7
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 6.2e-31 139.8 127 53.5
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.6e-29 134.4 97 68.0
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 6.0e-26 123.2 79 78.5
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 4.3e-24 117.1 229 32.3
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.0e-21 108.2 106 52.8
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.2e-19 100.9 91 58.2
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 8.2e-15 86.3 48 89.6
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 1.8e-09 68.6 112 35.7
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 3.3e-08 64.3 52 67.3
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 7.4e-08 63.2 191 32.5
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 6.9e-06 56.6 40 72.5


User provided reference genes

Program Settings