Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold198G41076 Striga asiatica HOM05D000317 ORTHO05D000032 6.6e-63 243.8 118 100.0
SGA_v2.0_scaffold36G14299 Striga asiatica HOM05D000317 ORTHO05D000032 3.2e-33 145.2 136 64.0
MSTRG.12174 Avicennia marina HOM05D000317 ORTHO05D000032 4.7e-29 131.3 130 56.9
COL.COLO4_16948 Corchorus olitorius HOM05D000317 ORTHO05D000032 1.3e-26 123.2 132 56.1
Cc08_g03280 Coffea canephora HOM05D000317 ORTHO05D000032 8.4e-26 120.6 129 53.5
CSS0021269 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 1.9e-25 119.4 130 56.2
Thecc.03G309600 Theobroma cacao HOM05D000317 ORTHO05D000032 1.9e-25 119.4 131 56.5
QL12p001426 Quercus lobata HOM05D000317 ORTHO05D000032 2.4e-25 119.0 130 54.6
Gorai.008G224400 Gossypium raimondii HOM05D000317 ORTHO05D000032 3.2e-25 118.6 132 55.3
Cfa012523 Carpinus fangiana HOM05D000317 ORTHO05D000032 5.4e-25 117.9 132 53.0
Duzib068G0674 Durio zibethinus HOM05D000317 ORTHO05D000032 5.4e-25 117.9 133 54.9
GSVIVG01013085001 Vitis vinifera HOM05D000317 ORTHO05D000032 5.4e-25 117.9 128 56.2
Gohir.A12G206500 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.2e-24 116.7 131 55.0
Gohir.D12G208900 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.2e-24 116.7 131 55.0
CSS0001412 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 2.1e-24 115.9 124 58.1
Manes.17G010300 Manihot esculenta HOM05D000317 ORTHO05D000032 2.7e-24 115.5 129 55.8
VMungo1215G1741 Vigna mungo HOM05D000317 ORTHO05D000032 3.5e-24 115.2 133 51.1
Dinv25254 Davidia involucrata HOM05D000317 ORTHO05D000032 6.0e-24 114.4 143 49.7
Dinv28999 Davidia involucrata HOM05D000317 ORTHO05D000032 6.0e-24 114.4 130 55.4
Phvul.002G137300 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 6.0e-24 114.4 133 51.1
Hma1.2p1_1027F.1_g249500 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 7.8e-24 114.0 130 52.3
TWI81G0528 Tripterygium wilfordii HOM05D000317 ORTHO05D000032 1.0e-23 113.6 128 53.9
Duzib205G0608 Durio zibethinus HOM05D000317 ORTHO05D000032 1.3e-23 113.2 133 54.9
Duzib084G1359 Durio zibethinus HOM05D000317 ORTHO05D000032 1.7e-23 112.8 130 55.4
Gohir.A08G153966 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.7e-23 112.8 132 53.0
CiPaw.11G098000 Carya illinoinensis HOM05D000317 ORTHO05D000032 2.3e-23 112.5 129 52.7
TWI60G1722 Tripterygium wilfordii HOM05D000317 ORTHO05D000032 2.3e-23 112.5 133 51.1
Lalb_Chr05g0215791 Lupinus albus HOM05D000317 ORTHO05D000032 3.0e-23 112.1 133 52.6
Glyma.09G207300 Glycine max HOM05D000317 ORTHO05D000032 5.1e-23 111.3 134 51.5
Gohir.D08G174900 Gossypium hirsutum HOM05D000317 ORTHO05D000032 5.1e-23 111.3 132 52.3
Gorai.004G182500 Gossypium raimondii HOM05D000317 ORTHO05D000032 5.1e-23 111.3 132 52.3
Nitab4.5_0000109g0060 Nicotiana tabacum HOM05D000317 ORTHO05D000032 8.7e-23 110.5 141 49.6
Medtr5g029470 Medicago truncatula HOM05D000317 ORTHO05D000032 1.1e-22 110.2 135 50.4
Aqoxy3G02188 Aquilegia oxysepala HOM05D000317 ORTHO05D000032 1.5e-22 109.8 124 50.0
Psat2g138760 Pisum sativum HOM05D000317 ORTHO05D000032 1.5e-22 109.8 135 50.4
Lalb_Chr09g0325511 Lupinus albus HOM05D000317 ORTHO05D000032 1.9e-22 109.4 127 52.8
Lalb_Chr16g0381111 Lupinus albus HOM05D000317 ORTHO05D000032 2.5e-22 109.0 133 51.9
ClCG09G011660 Citrullus lanatus HOM05D000317 ORTHO05D000032 3.3e-22 108.6 140 50.0
TPR.G19428 Trifolium pratense HOM05D000317 ORTHO05D000032 3.3e-22 108.6 133 49.6
Ca_25184_v3 Cicer arietinum L. HOM05D000317 ORTHO05D000032 4.3e-22 108.2 132 50.8
CiPaw.12G067800 Carya illinoinensis HOM05D000317 ORTHO05D000032 5.6e-22 107.8 134 51.5
PSO063G4639 Papaver somniferum HOM05D000317 ORTHO05D000032 5.6e-22 107.8 132 48.5
PSO782G1527 Papaver somniferum HOM05D000317 ORTHO05D000032 5.6e-22 107.8 132 48.5
Ah.12g055460 Amaranthus hybridus HOM05D000317 ORTHO05D000032 1.3e-21 106.7 135 47.4
Lj2g0009365 Lotus japonicus HOM05D000317 ORTHO05D000032 2.8e-21 105.5 134 50.0
Sabra01G0106200 Salix brachista HOM05D000317 ORTHO05D000032 2.8e-21 105.5 129 53.5
Hund11189 Selenicereus undatus HOM05D000317 ORTHO05D000032 2.8e-21 105.5 141 45.4
Potri.003G096300 Populus trichocarpa HOM05D000317 ORTHO05D000032 4.8e-21 104.8 129 49.6
Cpa.g.sc208.13 Carica papaya HOM05D000317 ORTHO05D000032 8.1e-21 104.0 123 55.3
Nitab4.5_0001632g0010 Nicotiana tabacum HOM05D000317 ORTHO05D000032 1.1e-20 103.6 136 50.0
Ciclev10001292m.g Citrus clementina HOM05D000317 ORTHO05D000032 1.4e-20 103.2 124 51.6
AUR62018645 Chenopodium quinoa HOM05D000317 ORTHO05D000032 3.1e-20 102.1 142 46.5
PGSC0003DMG400016767 Solanum tuberosum HOM05D000317 ORTHO05D000032 5.3e-20 101.3 141 48.2
Atru.chr6.1515 Acer truncatum HOM05D000317 ORTHO05D000032 6.9e-20 100.9 137 47.4
arahy.Tifrunner.gnm1.ann1.6E07G6 Arachis hypogaea HOM05D000317 ORTHO05D000032 6.9e-20 100.9 145 49.0
arahy.Tifrunner.gnm1.ann1.P7Z227 Arachis hypogaea HOM05D000317 ORTHO05D000032 6.9e-20 100.9 145 49.0
Rhsim11G0020700 Rhododendron simsii HOM05D000317 ORTHO05D000032 2.0e-19 99.4 132 52.3
Solyc06g066340.4 Solanum lycopersicum HOM05D000317 ORTHO05D000032 2.6e-19 99.0 141 47.5
Sc01g0007180 Simmondsia chinensis HOM05D000317 ORTHO05D000032 4.5e-19 98.2 144 43.8
DCAR_004273 Daucus carota HOM05D000317 ORTHO05D000032 5.8e-19 97.8 145 48.3
Potri.001G137600 Populus trichocarpa HOM05D000317 ORTHO05D000032 5.8e-19 97.8 130 53.1
Sopen06g021670 Solanum pennellii HOM05D000317 ORTHO05D000032 5.8e-19 97.8 141 48.9
CAN.G474.20 Capsicum annuum HOM05D000317 ORTHO05D000032 9.9e-19 97.1 148 45.9
Nn1g00197 Nelumbo nucifera HOM05D000317 ORTHO05D000032 9.9e-19 97.1 131 46.6
Actinidia14782 Actinidia chinensis HOM05D000317 ORTHO05D000032 1.3e-18 96.7 123 49.6
CsaV3_3G048880 Cucumis sativus L. HOM05D000317 ORTHO05D000032 1.3e-18 96.7 141 46.1
Medtr8g066310 Medicago truncatula HOM05D000317 ORTHO05D000032 1.3e-18 96.7 134 46.3
MELO3C003436.2 Cucumis melo HOM05D000317 ORTHO05D000032 1.7e-18 96.3 141 46.1
Migut.E00748 Erythranthe guttata HOM05D000317 ORTHO05D000032 2.2e-18 95.9 90 61.1
Solyc08g005260.2 Solanum lycopersicum HOM05D000317 ORTHO05D000032 2.2e-18 95.9 135 48.9
TAR374G0494 Trochodendron aralioides HOM05D000317 ORTHO05D000032 2.9e-18 95.5 128 46.9
Manes.15G185500 Manihot esculenta HOM05D000317 ORTHO05D000032 3.8e-18 95.1 128 47.7
Lsat_1_v5_gn_3_18021 Lactuca sativa HOM05D000317 ORTHO05D000032 6.4e-18 94.4 128 50.8
Nn3g19401 Nelumbo nucifera HOM05D000317 ORTHO05D000032 6.4e-18 94.4 128 50.8
Peaxi162Scf00045g00221 Petunia axillaris HOM05D000317 ORTHO05D000032 6.4e-18 94.4 136 44.9
AUR62007349 Chenopodium quinoa HOM05D000317 ORTHO05D000032 8.4e-18 94.0 138 44.2
Sopen08g001280 Solanum pennellii HOM05D000317 ORTHO05D000032 8.4e-18 94.0 135 47.4
MSTRG.13738 Avicennia marina HOM05D000317 ORTHO05D000032 1.9e-17 92.8 131 51.9
Sed0022531 Sechium edule HOM05D000317 ORTHO05D000032 1.9e-17 92.8 139 48.2
Actinidia01321 Actinidia chinensis HOM05D000317 ORTHO05D000032 2.4e-17 92.4 101 52.5
Gohir.A08G154032 Gossypium hirsutum HOM05D000317 ORTHO05D000032 5.4e-17 91.3 83 59.0
Hma1.2p1_0870F.1_g230865 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 5.4e-17 91.3 128 46.9
Prupe.5G028400 Prunus persica HOM05D000317 ORTHO05D000032 9.3e-17 90.5 149 41.6
CAN.G137.8 Capsicum annuum HOM05D000317 ORTHO05D000032 1.2e-16 90.1 129 48.1
Eucgr.E00234 Eucalyptus grandis HOM05D000317 ORTHO05D000032 1.2e-16 90.1 127 48.0
PGSC0003DMG400018472 Solanum tuberosum HOM05D000317 ORTHO05D000032 1.6e-16 89.7 135 44.4
Lsat_1_v5_gn_6_3581 Lactuca sativa HOM05D000317 ORTHO05D000032 2.1e-16 89.4 124 44.4
HanXRQChr06g0172741 Helianthus annuus HOM05D000317 ORTHO05D000032 3.5e-16 88.6 126 46.0
MD06G1026200 Malus domestica HOM05D000317 ORTHO05D000032 3.5e-16 88.6 146 39.0
MD16G1279800 Malus domestica HOM05D000317 ORTHO05D000032 4.6e-16 88.2 146 37.7
Peaxi162Scf00185g00095 Petunia axillaris HOM05D000317 ORTHO05D000032 4.6e-16 88.2 138 48.6
Phvul.003G283000 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 6.0e-16 87.8 125 43.2
PGR042G2955 Punica granatum HOM05D000317 ORTHO05D000032 6.0e-16 87.8 130 44.6
Sed0026002 Sechium edule HOM05D000317 ORTHO05D000032 6.0e-16 87.8 131 48.9
TAR629G0315 Trochodendron aralioides HOM05D000317 ORTHO05D000032 6.0e-16 87.8 135 44.4
A05p25090 Brassica napus HOM05D000317 ORTHO05D000032 1.3e-15 86.7 125 48.8
Actinidia18127 Actinidia chinensis HOM05D000317 ORTHO05D000032 1.8e-15 86.3 124 44.4
ECA246G0064 Erigeron canadensis HOM05D000317 ORTHO05D000032 1.8e-15 86.3 129 47.3
FAN18G1634 Fragaria x ananassa HOM05D000317 ORTHO05D000032 2.3e-15 85.9 136 47.8
HanXRQChr17g0538151 Helianthus annuus HOM05D000317 ORTHO05D000032 2.3e-15 85.9 127 48.8
Hund14566 Selenicereus undatus HOM05D000317 ORTHO05D000032 2.3e-15 85.9 156 40.4
BcaC05g27898 Brassica carinata HOM05D000317 ORTHO05D000032 3.9e-15 85.1 126 48.4
C05p39050 Brassica napus HOM05D000317 ORTHO05D000032 3.9e-15 85.1 126 48.4
BolC5t32642H Brassica oleracea HOM05D000317 ORTHO05D000032 3.9e-15 85.1 126 48.4
FAN04G1143 Fragaria x ananassa HOM05D000317 ORTHO05D000032 5.1e-15 84.7 135 45.9
BraA05t21391Z Brassica rapa HOM05D000317 ORTHO05D000032 6.7e-15 84.3 125 48.0
THA.LOC104798490 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 1.5e-14 83.2 133 46.6
Carub.0001s3057 Capsella rubella HOM05D000317 ORTHO05D000032 1.9e-14 82.8 126 46.8
FAN18G4490 Fragaria x ananassa HOM05D000317 ORTHO05D000032 2.5e-14 82.4 135 47.4
BcaB03g13749 Brassica carinata HOM05D000317 ORTHO05D000032 3.3e-14 82.0 125 46.4
AL1G46380 Arabidopsis lyrata HOM05D000317 ORTHO05D000032 4.3e-14 81.6 125 46.4
AT1G32240 Arabidopsis thaliana HOM05D000317 ORTHO05D000032 4.3e-14 81.6 125 46.4
Thhalv10007844m.g Eutrema salsugineum HOM05D000317 ORTHO05D000032 4.3e-14 81.6 127 48.0
Sp1g27920 Schrenkiella parvula HOM05D000317 ORTHO05D000032 4.3e-14 81.6 127 48.0
TPR.G3355 Trifolium pratense HOM05D000317 ORTHO05D000032 4.3e-14 81.6 138 44.2
Eucgr.D02225 Eucalyptus grandis HOM05D000317 ORTHO05D000032 7.4e-14 80.9 131 42.7
Sabra03G0065000 Salix brachista HOM05D000317 ORTHO05D000032 9.6e-14 80.5 190 34.2
ECA233G5042 Erigeron canadensis HOM05D000317 ORTHO05D000032 1.6e-13 79.7 133 46.6
CARHR031610 Cardamine hirsuta HOM05D000317 ORTHO05D000032 2.1e-13 79.3 126 47.6
FAN08G2613 Fragaria x ananassa HOM05D000317 ORTHO05D000032 2.8e-13 79.0 135 45.2
HanXRQChr13g0415631 Helianthus annuus HOM05D000317 ORTHO05D000032 3.7e-13 78.6 127 41.7
TAR375G0136 Trochodendron aralioides HOM05D000317 ORTHO05D000032 3.7e-13 78.6 129 40.3
VMungo0251G0631 Vigna mungo HOM05D000317 ORTHO05D000032 3.7e-13 78.6 131 40.5
Aa31LG2G13760 Aethionema arabicum HOM05D000317 ORTHO05D000032 1.8e-12 76.3 125 44.0
FvH4_5g22990 Fragaria vesca HOM05D000317 ORTHO05D000032 2.4e-12 75.9 96 51.0
Glyma.01G014800 Glycine max HOM05D000317 ORTHO05D000032 4.0e-12 75.1 128 42.2
RcHm_v2.0_Chr7g0211731 Rosa chinensis HOM05D000317 ORTHO05D000032 4.0e-12 75.1 93 47.3
CSS0047374 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 5.3e-12 74.7 68 55.9
Hma1.2p1_2886F.1_g329910 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 5.3e-12 74.7 87 47.1
THA.LOC104812758 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 5.3e-12 74.7 126 44.4
CDE11G1153 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 9.0e-12 73.9 129 40.3
HanXRQChr13g0396311 Helianthus annuus HOM05D000317 ORTHO05D000032 1.2e-11 73.6 126 44.4
FAN13G3098 Fragaria x ananassa HOM05D000317 ORTHO05D000032 1.5e-11 73.2 135 44.4
BcaB07g32904 Brassica carinata HOM05D000317 ORTHO05D000032 2.6e-11 72.4 124 43.5
CDE02G4480 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 3.4e-11 72.0 127 40.2
A09p33900 Brassica napus HOM05D000317 ORTHO05D000032 4.5e-11 71.6 126 45.2
BraA09t38937Z Brassica rapa HOM05D000317 ORTHO05D000032 4.5e-11 71.6 126 45.2
BcaC05g27897 Brassica carinata HOM05D000317 ORTHO05D000032 1.3e-10 70.1 95 47.4
C05p31700 Brassica napus HOM05D000317 ORTHO05D000032 1.7e-10 69.7 126 44.4
THA.LOC104814418 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 2.9e-10 68.9 135 42.2
GSVIVG01024383001 Vitis vinifera HOM05D000317 ORTHO05D000032 2.9e-10 68.9 124 37.1
BcaC07g37626 Brassica carinata HOM05D000317 ORTHO05D000032 3.8e-10 68.6 126 43.7
BolC8t47995H Brassica oleracea HOM05D000317 ORTHO05D000032 3.8e-10 68.6 126 43.7
BolC5t31895H Brassica oleracea HOM05D000317 ORTHO05D000032 4.9e-10 68.2 126 44.4
EL10Ac5g12020 Beta vulgaris HOM05D000317 ORTHO05D000032 8.4e-10 67.4 74 52.7
Oeu027085.1 Olea europaea HOM05D000317 ORTHO05D000032 8.4e-10 67.4 63 58.7
SHI07422 Sapria himalayana HOM05D000317 ORTHO05D000032 2.4e-09 65.9 129 41.1
vmacro00284 Vaccinium macrocarpon HOM05D000317 ORTHO05D000032 4.2e-09 65.1 70 54.3
Rhsim07G0131500 Rhododendron simsii HOM05D000317 ORTHO05D000032 7.1e-09 64.3 121 39.7
ATR0598G215 Amborella trichopoda HOM05D000317 ORTHO05D000032 2.1e-08 62.8 130 36.9
PGR031G0812 Punica granatum HOM05D000317 ORTHO05D000032 3.5e-08 62.0 121 42.1
ATR0829G065 Amborella trichopoda HOM05D000317 ORTHO05D000032 1.0e-07 60.5 117 31.6
HPP92_014665 Vanilla planifolia HOM05D000317 ORTHO05D000032 1.8e-07 59.7 129 35.7
Lsat_1_v5_gn_6_81281 Lactuca sativa HOM05D000317 ORTHO05D000032 2.3e-07 59.3 129 38.0
Cc07_g13030 Coffea canephora HOM05D000317 ORTHO05D000032 8.7e-07 57.4 137 38.0
CsaV3_3G001390 Cucumis sativus L. HOM05D000317 ORTHO05D000032 8.7e-07 57.4 149 38.3
Os08g0160300 Oryza sativa ssp. japonica HOM05D000317 ORTHO05D000032 8.7e-07 57.4 135 36.3
DCAR_008227 Daucus carota HOM05D000317 ORTHO05D000032 1.1e-06 57.0 76 53.9
ClCG10G001320 Citrullus lanatus HOM05D000317 ORTHO05D000032 1.9e-06 56.2 154 37.0
Oeu009428.1 Olea europaea HOM05D000317 ORTHO05D000032 2.5e-06 55.8 135 34.1
Oeu048962.1 Olea europaea HOM05D000317 ORTHO05D000032 2.5e-06 55.8 134 34.3


User provided reference genes

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