Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 7.6e-59 230.3 120 100.0
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 7.9e-56 220.3 120 95.0
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.4e-52 209.5 120 90.8
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.5e-51 206.1 114 93.0
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 1.5e-51 206.1 120 89.2
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.0e-51 205.7 114 93.0
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.6e-51 205.3 120 89.2
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 3.4e-51 204.9 114 90.4
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 3.4e-51 204.9 114 90.4
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.4e-51 204.9 114 90.4
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 4.5e-51 204.5 114 90.4
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 4.5e-51 204.5 120 89.2
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 5.9e-51 204.1 120 90.0
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 7.7e-51 203.8 113 92.0
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.3e-50 203.0 114 92.1
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.3e-50 203.0 120 88.3
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 90.3
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 2.9e-50 201.8 114 89.5
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 3.8e-50 201.4 120 88.3
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 3.8e-50 201.4 120 89.2
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 3.8e-50 201.4 113 89.4
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 5.0e-50 201.1 120 88.3
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 5.0e-50 201.1 113 91.2
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 6.5e-50 200.7 114 89.5
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 6.5e-50 200.7 114 89.5
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 6.5e-50 200.7 117 87.2
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 8.5e-50 200.3 120 84.2
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 8.5e-50 200.3 113 89.4
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 8.5e-50 200.3 112 89.3
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 8.5e-50 200.3 114 90.4
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 8.5e-50 200.3 113 90.3
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.1e-49 199.9 120 88.3
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.1e-49 199.9 120 85.8
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-49 199.5 122 85.2
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-49 199.5 122 85.2
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.9e-49 199.1 113 88.5
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 1.9e-49 199.1 114 89.5
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.9e-49 199.1 114 88.6
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.9e-49 199.1 114 88.6
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 2.5e-49 198.7 113 89.4
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 2.5e-49 198.7 113 90.3
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 2.5e-49 198.7 113 89.4
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.5e-49 198.7 113 89.4
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.5e-49 198.7 114 86.8
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.5e-49 198.7 122 86.1
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.5e-49 198.7 113 90.3
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 3.2e-49 198.4 120 88.3
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 4.2e-49 198.0 120 88.3
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 4.2e-49 198.0 115 88.7
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 4.2e-49 198.0 113 89.4
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 5.5e-49 197.6 113 88.5
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 5.5e-49 197.6 113 89.4
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 5.5e-49 197.6 120 85.0
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 7.2e-49 197.2 114 87.7
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 7.2e-49 197.2 113 88.5
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 7.2e-49 197.2 113 89.4
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 7.2e-49 197.2 113 89.4
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 7.2e-49 197.2 120 87.5
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.2e-49 197.2 120 86.7
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 7.2e-49 197.2 114 91.2
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 7.2e-49 197.2 120 87.5
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 7.2e-49 197.2 113 89.4
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 7.2e-49 197.2 113 88.5
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 9.4e-49 196.8 117 87.2
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 9.4e-49 196.8 113 88.5
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 9.4e-49 196.8 113 88.5
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 9.4e-49 196.8 113 90.3
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 9.4e-49 196.8 120 86.7
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 88.5
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 88.5
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.2e-48 196.4 114 87.7
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 1.2e-48 196.4 120 86.7
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.2e-48 196.4 120 86.7
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 86.7
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.2e-48 196.4 121 86.8
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 88.5
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 87.7
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 2.1e-48 195.7 113 87.6
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 2.1e-48 195.7 113 87.6
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 2.1e-48 195.7 113 88.5
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 2.1e-48 195.7 113 88.5
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 2.1e-48 195.7 113 88.5
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 85.8
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 2.7e-48 195.3 109 90.8
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.6e-48 194.9 120 84.2
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 4.6e-48 194.5 120 85.8
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 4.6e-48 194.5 113 87.6
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.1e-48 194.1 115 87.8
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.1e-48 194.1 115 87.8
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 6.1e-48 194.1 115 87.8
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 6.1e-48 194.1 113 88.5
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 7.9e-48 193.7 113 87.6
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 86.7
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 88.5
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 87.6
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.4e-47 193.0 117 83.8
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.4e-47 193.0 117 83.8
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.8e-47 192.6 113 86.7
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 2.3e-47 192.2 113 85.8
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 3.0e-47 191.8 120 82.5
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.0e-47 191.8 114 84.2
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 3.0e-47 191.8 111 88.3
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.9e-47 191.4 117 82.9
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 6.7e-47 190.7 113 86.7
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 6.7e-47 190.7 110 87.3
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 6.7e-47 190.7 117 83.8
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 1.5e-46 189.5 111 87.4
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 2.5e-46 188.7 111 85.6
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 2.5e-46 188.7 120 81.7
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 3.3e-46 188.3 113 82.3
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 3.3e-46 188.3 113 85.8
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 5.7e-46 187.6 116 82.8
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 5.7e-46 187.6 111 86.5
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 9.7e-46 186.8 112 88.4
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 9.7e-46 186.8 116 81.9
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 1.3e-45 186.4 113 84.1
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.3e-45 186.4 113 85.0
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 6.3e-45 184.1 118 78.0
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 1.1e-44 183.3 110 83.6
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 2.4e-44 182.2 113 82.3
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 3.1e-44 181.8 105 88.6
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 9.1e-44 180.3 113 77.9
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 9.1e-44 180.3 113 81.4
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.2e-43 179.9 130 76.9
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 1.5e-43 179.5 109 83.5
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 2.0e-43 179.1 149 67.1
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 7.7e-43 177.2 112 78.6
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 7.7e-43 177.2 109 80.7
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.1e-41 173.3 114 71.9
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.3e-39 165.6 180 57.2
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 7.4e-38 160.6 107 73.8
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 1.3e-37 159.8 197 50.8
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.8e-37 158.7 88 90.9
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 2.8e-37 158.7 89 86.5
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 4.8e-37 157.9 124 74.2
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 2.2e-34 149.1 85 88.2
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 3.2e-33 145.2 85 87.1
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.7e-32 142.1 86 83.7
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 8.0e-32 140.6 81 86.4
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.0e-31 140.2 72 93.1
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.4e-31 139.8 86 82.6
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 3.9e-31 138.3 99 75.8
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 8.8e-31 137.1 85 82.4
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.5e-30 136.3 82 84.1
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 5.7e-30 134.4 106 69.8
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 5.7e-30 134.4 106 69.8
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 1.1e-28 130.2 67 94.0
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.8e-28 129.4 82 80.5
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.3e-26 123.2 106 53.8
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 3.8e-26 121.7 80 80.0
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 8.5e-26 120.6 83 68.7
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 5.5e-25 117.9 70 87.1
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.7e-24 115.5 70 85.7
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.3e-22 108.6 74 75.7
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 9.7e-22 107.1 83 68.7
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 2.0e-19 99.4 108 59.3
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.0e-19 99.4 72 65.3
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 2.3e-15 85.9 51 82.4
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 5.0e-10 68.2 48 75.0
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 7.2e-09 64.3 42 78.6
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 7.2e-09 64.3 42 78.6
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 7.2e-09 64.3 42 78.6
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 8.0e-08 60.8 62 59.7
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 8.9e-07 57.4 45 68.9
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 8.9e-07 57.4 45 66.7


User provided reference genes

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