Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 7.3e-270 933.3 480 100.0
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 1.0e-186 657.1 484 73.1
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 2.0e-182 642.9 482 69.9
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 2.9e-178 629.0 475 68.6
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 8.9e-167 590.9 487 64.5
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 1.5e-166 590.1 477 63.3
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 1.4e-164 583.6 485 62.9
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 3.9e-162 575.5 359 77.4
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 3.9e-162 575.5 435 64.4
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 1.1e-161 573.9 387 71.8
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 1.1e-161 573.9 484 61.6
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.8e-160 569.3 479 61.4
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 2.8e-160 569.3 473 61.9
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.4e-159 567.0 477 60.8
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 1.4e-159 567.0 473 61.9
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 1.4e-159 567.0 485 60.8
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 8.9e-159 564.3 441 62.6
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 8.9e-159 564.3 441 62.6
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 8.9e-159 564.3 483 61.1
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 7.6e-158 561.2 477 59.1
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 8.3e-157 557.8 480 59.4
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 3.2e-156 555.8 389 68.4
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 4.1e-156 555.4 466 60.5
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 5.4e-156 555.1 482 60.2
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 7.1e-156 554.7 432 62.7
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 1.6e-155 553.5 466 60.5
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.6e-155 553.5 476 60.5
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.5e-155 552.4 387 69.8
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 3.5e-155 552.4 351 74.9
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 6.0e-155 551.6 479 60.1
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 8.6e-154 547.7 474 58.2
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 1.5e-153 547.0 483 58.4
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.9e-153 546.6 493 57.8
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 2.5e-153 546.2 472 59.7
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 2.5e-153 546.2 474 58.2
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 3.6e-152 542.3 477 59.3
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 3.6e-152 542.3 423 63.8
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 4.7e-152 542.0 475 59.4
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 4.7e-152 542.0 475 56.8
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 8.1e-152 541.2 397 64.7
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 8.1e-152 541.2 397 64.7
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.1e-151 540.8 350 71.7
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.4e-151 539.7 388 67.5
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 1.2e-150 537.3 394 65.5
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 1.5e-150 537.0 393 66.9
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 7.6e-150 534.6 471 58.6
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 7.6e-150 534.6 394 64.2
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 7.6e-150 534.6 397 65.5
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 9.9e-150 534.3 394 66.0
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 1.7e-149 533.5 380 67.1
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 1.7e-149 533.5 395 64.6
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 2.2e-149 533.1 477 58.1
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 2.2e-149 533.1 479 59.1
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 6.4e-149 531.6 330 75.8
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 5.4e-148 528.5 399 63.2
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 7.1e-148 528.1 388 67.0
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 9.3e-148 527.7 399 63.4
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 9.3e-148 527.7 399 63.4
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 9.3e-148 527.7 380 67.4
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 2.1e-147 526.6 497 56.5
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 3.5e-147 525.8 482 56.0
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.5e-147 525.8 436 62.2
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 4.6e-147 525.4 478 55.4
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.6e-147 525.4 380 65.8
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 4.6e-147 525.4 477 58.3
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 6.0e-147 525.0 395 64.1
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 7.8e-147 524.6 447 61.5
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 1.0e-146 524.2 480 56.0
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.0e-146 524.2 388 66.8
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 1.0e-146 524.2 530 55.3
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 2.3e-146 523.1 480 55.6
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 5.1e-146 521.9 465 56.3
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 5.1e-146 521.9 380 66.1
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 1.1e-145 520.8 469 59.7
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 1.1e-145 520.8 485 54.6
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 1.1e-145 520.8 484 55.2
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 2.5e-145 519.6 478 55.2
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 3.3e-145 519.2 500 54.8
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 5.6e-145 518.5 473 58.1
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 9.6e-145 517.7 470 56.2
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 4.8e-144 515.4 401 62.1
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 4.8e-144 515.4 380 65.0
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 6.2e-144 515.0 351 68.9
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 1.1e-143 514.2 373 67.8
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 1.4e-143 513.8 385 63.1
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 1.8e-143 513.5 401 62.1
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 1.8e-143 513.5 401 62.1
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 3.4e-142 509.2 480 54.4
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 4.4e-142 508.8 598 48.5
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 7.6e-142 508.1 370 67.6
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 9.9e-142 507.7 472 57.6
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 2.2e-141 506.5 506 55.3
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 2.2e-141 506.5 351 67.5
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 4.9e-141 505.4 503 56.7
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 8.4e-141 504.6 477 55.1
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.9e-140 503.4 347 66.9
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 9.3e-140 501.1 349 69.1
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 1.2e-139 500.7 481 55.1
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.6e-139 500.4 351 68.7
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.6e-139 500.4 473 56.9
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 2.7e-139 499.6 308 76.0
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 2.3e-138 496.5 437 57.7
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 6.6e-138 495.0 373 64.9
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 8.7e-138 494.6 503 52.1
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 1.9e-137 493.4 444 59.5
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 3.1e-135 486.1 357 63.9
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 5.8e-134 481.9 448 56.0
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 5.8e-134 481.9 366 62.0
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 9.9e-134 481.1 330 69.1
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 1.9e-132 476.9 465 53.3
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 5.4e-132 475.3 430 58.4
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.0e-130 471.1 413 58.4
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.0e-130 471.1 413 58.4
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 3.1e-127 459.5 326 68.7
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 4.5e-126 455.7 475 54.1
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 2.1e-123 446.8 373 59.2
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 6.0e-123 445.3 459 51.9
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 3.3e-121 439.5 463 49.7
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 6.2e-120 435.3 324 64.5
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 1.1e-119 434.5 351 57.5
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 2.4e-119 433.3 351 63.5
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 6.9e-119 431.8 324 64.2
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.7e-117 427.2 439 52.2
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.1e-113 414.5 407 49.6
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 2.5e-113 413.3 373 56.6
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 1.6e-112 410.6 397 55.9
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 4.6e-107 392.5 245 73.9
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.8e-104 383.3 354 53.7
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.1e-103 381.3 359 57.9
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 7.2e-100 368.6 364 49.7
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 3.6e-99 366.3 252 70.6
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 4.7e-99 365.9 222 74.3
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.2e-96 357.1 248 67.3
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 3.8e-85 319.7 206 71.8
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 9.2e-71 271.9 325 41.5
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.3e-64 251.5 176 69.9
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 4.9e-64 249.6 279 45.2
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 7.8e-62 242.3 295 44.7
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 6.2e-51 206.1 176 58.0
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 2.9e-32 144.1 93 73.1
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 3.2e-31 140.6 128 57.8
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.5e-28 131.7 85 71.8
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 3.8e-24 117.1 77 70.1
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 7.9e-22 109.4 93 57.0
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 2.4e-18 97.8 95 51.6
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 6.9e-18 96.3 62 69.4
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 4.5e-17 93.6 108 47.2
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.2e-15 87.4 58 70.7
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.2e-15 87.4 58 70.7
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.2e-15 87.4 58 70.7
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 9.3e-15 85.9 58 69.0
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 1.6e-14 85.1 55 72.7
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.0e-13 82.4 54 66.7
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 5.3e-10 70.1 79 51.9
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 1.0e-08 65.9 32 81.2
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 7.1e-07 59.7 36 77.8
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 7.1e-07 59.7 36 77.8


User provided reference genes

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