Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.2e-121 439.9 232 100.0
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.7e-54 216.9 232 54.3
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.4e-48 197.2 231 50.2
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 1.8e-48 196.8 233 50.6
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 8.4e-46 188.0 229 49.8
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.2e-44 184.1 230 48.7
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.6e-44 183.7 235 48.9
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 4.6e-44 182.2 228 49.6
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 7.9e-44 181.4 242 44.6
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.0e-43 181.0 235 49.4
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.1e-42 177.6 238 46.6
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.5e-42 177.2 230 48.3
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.9e-42 176.8 240 47.5
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 7.4e-42 174.9 279 40.5
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 1.6e-41 173.7 238 46.2
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 2.1e-41 173.3 242 45.9
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.1e-40 171.0 228 50.0
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 4.0e-40 169.1 219 47.0
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.2e-39 167.5 233 45.1
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.5e-39 167.2 230 43.0
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.0e-39 166.8 230 46.5
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.5e-39 165.6 229 44.5
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 7.6e-39 164.9 235 44.3
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 9.9e-39 164.5 229 44.1
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 9.9e-39 164.5 229 44.1
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 9.9e-39 164.5 224 45.5
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.3e-38 164.1 229 42.8
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 1.3e-38 164.1 227 44.9
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 2.2e-38 163.3 230 43.5
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 2.9e-38 162.9 230 44.8
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 3.8e-38 162.5 201 47.3
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 4.9e-38 162.2 231 43.7
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 4.9e-38 162.2 229 44.1
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.4e-38 161.8 234 42.3
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 8.4e-38 161.4 229 42.4
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.1e-37 161.0 227 43.6
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.1e-37 161.0 234 42.7
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 1.1e-37 161.0 228 46.1
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.9e-37 160.2 203 46.8
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.9e-37 160.2 225 43.1
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.9e-37 160.2 225 43.1
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 1.9e-37 160.2 224 43.8
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.4e-37 159.8 227 44.1
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 3.2e-37 159.5 227 44.5
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 3.2e-37 159.5 234 43.2
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 4.2e-37 159.1 200 47.0
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 4.2e-37 159.1 225 44.4
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 9.3e-37 157.9 229 43.2
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 1.2e-36 157.5 233 42.1
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.2e-36 157.5 224 42.4
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.6e-36 157.1 211 44.1
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 2.7e-36 156.4 228 42.1
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 2.7e-36 156.4 229 42.4
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 3.5e-36 156.0 230 42.2
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.6e-36 155.6 234 41.9
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 6.0e-36 155.2 226 42.5
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 6.0e-36 155.2 228 42.5
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 6.0e-36 155.2 234 41.0
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 7.9e-36 154.8 229 42.8
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 7.9e-36 154.8 129 60.5
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.0e-35 154.5 225 41.8
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 1.3e-35 154.1 230 41.3
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 1.8e-35 153.7 123 61.8
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.3e-35 153.3 229 42.8
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 3.0e-35 152.9 233 44.2
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 3.9e-35 152.5 230 42.6
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 5.1e-35 152.1 201 45.3
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 6.7e-35 151.8 233 45.5
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.1e-34 151.0 243 43.6
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.5e-34 150.6 225 43.6
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 1.5e-34 150.6 201 44.8
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.5e-34 149.8 201 45.8
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 2.5e-34 149.8 231 42.9
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 2.5e-34 149.8 197 45.7
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 2.5e-34 149.8 228 41.2
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.3e-33 147.5 236 44.9
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.3e-33 147.5 226 42.0
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 2.1e-33 146.7 233 44.6
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 2.8e-33 146.4 233 40.3
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 3.7e-33 146.0 224 41.1
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.1e-32 144.4 225 41.8
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.1e-32 144.4 123 63.4
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 1.4e-32 144.1 209 43.1
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 2.4e-32 143.3 200 42.0
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 5.3e-32 142.1 202 42.1
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 5.3e-32 142.1 225 39.6
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 6.9e-32 141.7 204 40.7
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 6.9e-32 141.7 221 41.2
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.5e-31 140.6 221 40.7
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 2.0e-31 140.2 205 41.5
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.0e-31 140.2 234 41.5
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 3.4e-31 139.4 205 41.5
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 3.4e-31 139.4 123 60.2
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 3.4e-31 139.4 204 40.7
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 5.8e-31 138.7 203 41.4
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 7.6e-31 138.3 205 41.5
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 7.6e-31 138.3 125 55.2
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.3e-30 137.5 225 38.2
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 1.3e-30 137.5 203 40.9
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 1.7e-30 137.1 231 40.3
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 2.2e-30 136.7 201 42.3
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 4.9e-30 135.6 205 40.0
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 4.9e-30 135.6 204 39.2
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 1.4e-29 134.0 202 39.1
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 4.2e-29 132.5 199 39.7
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 4.2e-29 132.5 199 39.7
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 5.5e-29 132.1 226 37.2
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 5.5e-29 132.1 226 36.7
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 7.1e-29 131.7 226 37.2
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 4.6e-28 129.0 201 38.8
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 5.1e-27 125.6 123 52.0
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 6.7e-27 125.2 131 48.1
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.9e-26 123.6 121 57.0
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 4.3e-26 122.5 200 40.0
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 9.7e-26 121.3 120 50.0
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.2e-25 120.2 103 62.1
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 2.2e-25 120.2 128 48.4
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.1e-24 117.9 126 49.2
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.1e-24 117.9 126 49.2
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 1.8e-24 117.1 130 50.0
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 2.4e-24 116.7 209 40.2
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-23 114.4 128 49.2
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-23 114.4 128 49.2
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.0e-22 111.3 134 46.3
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 6.1e-20 102.1 131 44.3
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 7.9e-20 101.7 228 32.9
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.4e-19 100.9 207 33.3
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 1.4e-19 100.9 300 31.3
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 2.5e-18 96.7 148 39.2
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 1.0e-14 84.7 106 44.3
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 6.5e-14 82.0 135 39.3
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 8.5e-14 81.6 117 43.6
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 7.2e-13 78.6 169 36.7
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 1.8e-08 63.9 156 33.3
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 5.3e-08 62.4 39 74.4
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 2.6e-07 60.1 54 53.7
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 2.2e-06 57.0 54 53.7
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 2.2e-06 57.0 54 51.9
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 2.2e-06 57.0 54 53.7


User provided reference genes

Program Settings