Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 6.7e-215 750.4 366 100.0
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 4.8e-104 382.1 455 51.2
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 4.8e-104 382.1 473 49.7
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.8e-104 382.1 464 50.2
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.8e-98 363.6 453 47.5
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.7e-96 355.9 479 46.6
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.8e-95 353.6 428 48.6
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 1.9e-92 343.6 425 47.5
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 7.2e-92 341.7 433 46.7
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 4.6e-91 339.0 448 45.5
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 3.9e-90 335.9 446 46.2
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 3.9e-90 335.9 467 42.8
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 5.1e-90 335.5 431 45.7
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 8.8e-90 334.7 475 44.2
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.1e-89 334.3 468 43.6
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.5e-89 334.0 457 44.4
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.5e-89 334.0 456 44.3
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 4.4e-89 332.4 456 44.1
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 2.2e-88 330.1 444 45.7
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 2.8e-88 329.7 461 44.5
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 4.8e-88 328.9 419 46.8
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 6.3e-88 328.6 357 49.9
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.1e-87 327.8 479 44.3
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 2.4e-87 326.6 471 43.5
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.4e-87 326.6 421 45.8
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 3.1e-87 326.2 394 47.5
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 4.1e-87 325.9 424 45.5
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.2e-86 324.3 429 44.3
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.0e-86 323.6 424 45.0
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 2.6e-86 323.2 414 45.2
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 3.4e-86 322.8 452 44.0
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.0e-85 321.2 415 45.8
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.3e-85 320.9 464 42.7
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.7e-85 320.5 454 42.7
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 8.5e-85 318.2 439 42.1
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 5.5e-84 315.5 378 46.6
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.2e-84 315.1 454 42.1
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 9.4e-84 314.7 448 42.0
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 1.6e-83 313.9 476 42.2
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.6e-83 313.9 432 44.7
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 7.9e-83 311.6 472 41.5
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.0e-82 311.2 474 42.8
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 1.0e-82 311.2 456 42.5
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.3e-82 310.1 473 40.4
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 3.0e-82 309.7 406 44.6
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 5.2e-82 308.9 442 42.8
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 1.1e-81 307.8 487 42.3
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.5e-81 307.4 460 41.1
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 9.7e-81 304.7 382 44.8
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 3.7e-80 302.8 463 42.5
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 6.3e-80 302.0 459 39.4
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 6.3e-80 302.0 470 40.6
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 8.2e-80 301.6 418 41.9
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 2.4e-79 300.1 369 44.2
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 4.1e-79 299.3 412 44.4
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 5.3e-79 298.9 374 46.3
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.5e-78 296.2 471 40.8
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 4.5e-78 295.8 471 40.8
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 4.5e-78 295.8 462 41.3
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 4.5e-78 295.8 408 43.6
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 7.7e-78 295.0 391 43.5
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.0e-77 294.7 391 43.7
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.7e-77 293.9 413 42.4
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 1.7e-77 293.9 467 38.3
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.9e-77 293.1 411 42.3
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 2.9e-77 293.1 474 40.7
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.0e-77 292.4 471 40.6
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 5.0e-77 292.4 372 44.6
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.5e-76 290.8 398 43.0
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.9e-76 290.4 441 40.1
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.9e-76 290.4 444 41.7
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.5e-76 290.0 439 43.3
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.2e-76 289.7 471 40.6
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.5e-76 288.9 465 40.2
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.6e-75 287.3 399 45.1
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.6e-75 287.3 468 39.7
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 2.7e-75 286.6 452 42.0
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 4.7e-75 285.8 434 42.2
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 6.1e-75 285.4 471 38.6
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 8.0e-75 285.0 417 43.6
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.8e-74 283.9 398 44.2
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 6.7e-74 282.0 343 47.2
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 8.8e-74 281.6 433 41.1
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 2.6e-73 280.0 458 40.0
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.3e-72 277.7 433 40.9
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.7e-72 277.3 460 40.2
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 4.8e-72 275.8 379 43.0
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 6.3e-72 275.4 438 42.0
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.1e-71 274.6 377 43.0
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.8e-71 273.9 369 43.1
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 4.1e-71 272.7 407 44.0
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 1.6e-70 270.8 404 43.3
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 2.0e-70 270.4 375 42.4
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 2.0e-70 270.4 407 44.0
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 3.5e-70 269.6 434 40.8
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 4.5e-70 269.2 437 40.5
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.5e-70 269.2 401 44.1
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 5.9e-70 268.9 368 42.4
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 5.9e-70 268.9 410 40.7
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.0e-69 268.1 438 40.2
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.0e-69 268.1 468 36.5
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.7e-69 267.3 401 43.9
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 2.2e-69 266.9 366 43.4
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 6.5e-69 265.4 469 39.7
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.5e-68 264.2 321 48.0
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 5.5e-68 262.3 466 36.5
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 9.4e-68 261.5 462 35.5
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.7e-67 260.0 417 41.5
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.6e-67 259.6 405 39.3
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 1.4e-66 257.7 368 41.6
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 1.8e-66 257.3 368 41.6
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.0e-66 256.1 405 40.2
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 4.0e-66 256.1 371 41.0
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 2.0e-65 253.8 456 37.9
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.4e-65 252.7 336 42.6
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.7e-64 250.8 349 43.3
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 2.2e-64 250.4 333 45.3
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 2.7e-62 243.4 444 39.0
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 4.5e-62 242.7 202 60.9
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 5.9e-62 242.3 275 49.8
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 5.0e-61 239.2 437 37.1
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.2e-59 234.6 426 37.1
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 4.0e-58 229.6 400 37.0
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 8.8e-58 228.4 203 57.6
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 6.3e-56 222.2 370 37.6
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 8.3e-56 221.9 199 60.3
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.0e-53 214.9 385 37.7
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 1.0e-53 214.9 420 34.5
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 3.3e-52 209.9 202 52.0
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 3.3e-52 209.9 341 38.1
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.7e-45 187.6 401 33.7
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.3e-42 177.2 395 35.2
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.2e-42 176.0 403 32.5
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-41 174.9 144 56.2
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-41 174.9 144 56.2
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.0e-41 174.1 387 33.3
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 5.8e-41 172.6 166 51.8
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 9.8e-41 171.8 365 34.0
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.9e-40 170.2 159 52.8
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.1e-39 168.3 164 50.6
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 7.0e-39 165.6 161 51.6
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 2.8e-35 153.7 161 47.2
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.7e-32 144.4 350 30.6
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.9e-31 141.0 328 31.4
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 7.1e-31 139.0 223 39.0
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 3.5e-30 136.7 142 49.3
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 7.8e-30 135.6 108 56.5
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.1e-23 115.2 212 36.3
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 4.7e-19 99.8 214 33.2
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.2e-18 96.3 192 31.8
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.3e-16 91.7 204 34.8
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.3e-16 91.7 204 34.8
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.1e-15 88.6 203 33.0
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 7.1e-07 59.3 107 33.6
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.5e-06 57.0 154 27.3


User provided reference genes

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