Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold197G41017 Striga asiatica HOM05D000680 ORTHO05D403640 2.4e-101 372.1 181 100.0
COL.COLO4_03249 Corchorus olitorius HOM05D000680 ORTHO05D000738 1.9e-08 63.5 100 42.0
Peaxi162Scf00075g01711 Petunia axillaris HOM05D000680 ORTHO05D000738 3.2e-08 62.8 72 54.2
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 7.1e-08 61.6 47 72.3
Atru.chr1.3577 Acer truncatum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Ah.10g027530 Amaranthus hybridus HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
ATR0303G001 Amborella trichopoda HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
arahy.Tifrunner.gnm1.ann1.487MWI Arachis hypogaea HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
arahy.Tifrunner.gnm1.ann1.QU8SEY Arachis hypogaea HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
CAN.G1693.4 Capsicum annuum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
CAN.G219.27 Capsicum annuum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Cfa021336 Carpinus fangiana HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Cfa021577 Carpinus fangiana HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
MELO3C027174.2 Cucumis melo HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
CsaV3_UNG203700 Cucumis sativus L. HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Gohir.1Z049799 Gossypium hirsutum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Gohir.1Z050092 Gossypium hirsutum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Gohir.A09G130000 Gossypium hirsutum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Gohir.A10G088051 Gossypium hirsutum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Gohir.D01G102294 Gossypium hirsutum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
LjContig00318g0012400 Lotus japonicus HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Lalb_Chr25g0281551 Lupinus albus HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
MD11G1295200 Malus domestica HOM05D000680 ORTHO05D000738 9.3e-08 61.2 47 70.2
Medtr1829s0010 Medicago truncatula HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Medtr3g035730 Medicago truncatula HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Medtr4g451275 Medicago truncatula HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Medtr7g021780 Medicago truncatula HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Medtr7g033755 Medicago truncatula HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Medtr7g033765 Medicago truncatula HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Nn265s45950 Nelumbo nucifera HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Oeu028780.1 Olea europaea HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Peaxi162Scf00334g01212 Petunia axillaris HOM05D000680 ORTHO05D005619 9.3e-08 61.2 42 78.6
Phvul.004G121666 Phaseolus vulgaris HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Potri.013G162800 Populus trichocarpa HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
PGR111G0097 Punica granatum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
QL93p0311_0023 Quercus lobata HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
SalBow1G0643 Salvia bowleyana HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
SalBow1G8499 Salvia bowleyana HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Sed0022660 Sechium edule HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Sc03g0005180 Simmondsia chinensis HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Sc19g0005980 Simmondsia chinensis HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Solyc00g500064.1 Solanum lycopersicum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
PGSC0003DMG400001014 Solanum tuberosum HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
SGA_v2.0_scaffold477G52214 Striga asiatica HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
unitig_91.g26506 Utricularia gibba HOM05D000680 ORTHO05D000738 9.3e-08 61.2 42 78.6
Ah.10g027840 Amaranthus hybridus HOM05D000680 ORTHO05D000738 1.6e-07 60.5 42 76.2
RcHm_v2.0_CPg0502121 Rosa chinensis HOM05D000680 ORTHO05D000738 2.1e-07 60.1 42 76.2
SEGI_32167 Sequoiadendron giganteum HOM05D001133 ORTHO05D000941 2.1e-07 60.1 72 51.4
VMungo0354G0001 Vigna mungo HOM05D000680 ORTHO05D000738 2.1e-07 60.1 42 76.2
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 2.1e-07 60.1 42 76.2
VMungo1383G0654 Vigna mungo HOM05D000680 ORTHO05D000738 2.1e-07 60.1 42 76.2
AL2G20670 Arabidopsis lyrata HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
AL2G21080 Arabidopsis lyrata HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
AL2G21510 Arabidopsis lyrata HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
ATCG00480 Arabidopsis thaliana HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
BcaC03g16541 Brassica carinata HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
BcaC04g20698 Brassica carinata HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
BNapus_Darmor_BZH_scaffold_287p00110 Brassica napus HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
C02p43500 Brassica napus HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
C09p40520 Brassica napus HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
BolC7t41721H Brassica oleracea HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
BolSC45t60949H Brassica oleracea HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
BolSC46t60996H Brassica oleracea HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
BolSC47t61101H Brassica oleracea HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
BraA06t25425Z Brassica rapa HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
BraSC25t45844Z Brassica rapa HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
BraSC25t45871Z Brassica rapa HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
CARHR282070 Cardamine hirsuta HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
ClCG07G007520 Citrullus lanatus HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
Lj4g0000089 Lotus japonicus HOM05D000680 ORTHO05D000738 2.7e-07 59.7 42 76.2
Os10g0355800 Oryza sativa ssp. japonica HOM05D000680 ORTHO05D000738 2.7e-07 59.7 47 70.2
Peaxi162Scf00405g00135 Petunia axillaris HOM05D000680 ORTHO05D000738 2.7e-07 59.7 41 78.0
arahy.Tifrunner.gnm1.ann1.5XLW1T Arachis hypogaea HOM05D000680 ORTHO05D000738 3.5e-07 59.3 42 76.2
Os12g0207500 Oryza sativa ssp. japonica HOM05D000680 ORTHO05D000738 3.5e-07 59.3 42 76.2
Sopen07g014630 Solanum pennellii HOM05D000713 ORTHO05D000547 3.5e-07 59.3 29 100.0
TWI14G1158 Tripterygium wilfordii HOM05D000680 ORTHO05D000738 3.5e-07 59.3 29 100.0
EL10Ac2g03511 Beta vulgaris HOM05D000680 ORTHO05D000738 4.6e-07 58.9 42 76.2
EL10As12g24024 Beta vulgaris HOM05D000680 ORTHO05D000738 4.6e-07 58.9 42 76.2
EL10As1g23051 Beta vulgaris HOM05D000680 ORTHO05D000738 4.6e-07 58.9 42 76.2
EL10As5g23624 Beta vulgaris HOM05D000680 ORTHO05D000738 4.6e-07 58.9 42 76.2
CDE02G3450 Ceratophyllum demersum HOM05D000680 ORTHO05D000738 4.6e-07 58.9 42 76.2
DCAR_032491 Daucus carota HOM05D000680 ORTHO05D000738 4.6e-07 58.9 42 73.8
Dinv26730 Davidia involucrata HOM05D000680 ORTHO05D000738 4.6e-07 58.9 42 76.2
Dinv29306 Davidia involucrata HOM05D000680 ORTHO05D000738 4.6e-07 58.9 42 76.2
Hma1.2p1_0218F.1_g092750 Hydrangea macrophylla HOM05D000680 ORTHO05D000738 4.6e-07 58.9 42 76.2
arahy.Tifrunner.gnm1.ann1.V9EYC9 Arachis hypogaea HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 76.2
Thhalv10011087m.g Eutrema salsugineum HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr00c0345g0573921 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr00c0702g0576851 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr00c0759g0577211 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr01g0020391 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr02g0041541 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr02g0044931 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr05g0151431 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr07g0200991 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr08g0210321 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr10g0283511 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr10g0289231 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQChr11g0326791 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
HanXRQCPg0580001 Helianthus annuus HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 73.8
SEGI_20135 Sequoiadendron giganteum HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 76.2
SEGI_23109 Sequoiadendron giganteum HOM05D000680 ORTHO05D000738 6.0e-07 58.5 42 76.2
arahy.Tifrunner.gnm1.ann1.0TL4CS Arachis hypogaea HOM05D000680 ORTHO05D000738 7.8e-07 58.2 72 48.6
BcaC04g20696 Brassica carinata HOM05D000680 ORTHO05D000738 7.8e-07 58.2 41 75.6
ECA054G0001 Erigeron canadensis HOM05D000680 ORTHO05D000738 7.8e-07 58.2 42 73.8
ECA074G0011 Erigeron canadensis HOM05D000680 ORTHO05D000738 7.8e-07 58.2 42 73.8
ECA077G0003 Erigeron canadensis HOM05D000680 ORTHO05D000738 7.8e-07 58.2 42 73.8
FAN11G2261 Fragaria x ananassa HOM05D000680 ORTHO05D013378 7.8e-07 58.2 29 96.6
Gohir.D07G155064 Gossypium hirsutum HOM05D000680 ORTHO05D005619 7.8e-07 58.2 29 96.6
Gorai.001G177300 Gossypium raimondii HOM05D000680 ORTHO05D005619 7.8e-07 58.2 29 96.6
Lsat_1_v5_gn_2_89820 Lactuca sativa HOM05D000680 ORTHO05D000738 7.8e-07 58.2 42 73.8
Lsat_1_v5_gn_3_99261 Lactuca sativa HOM05D000680 ORTHO05D000738 7.8e-07 58.2 42 73.8
Lsat_1_v5_gn_4_102720 Lactuca sativa HOM05D000680 ORTHO05D000738 7.8e-07 58.2 42 73.8
Lsat_1_v5_gn_4_128060 Lactuca sativa HOM05D000890 ORTHO05D000697 7.8e-07 58.2 42 73.8
Medtr0002s0650 Medicago truncatula HOM05D000680 ORTHO05D000738 7.8e-07 58.2 42 73.8
Actinidia34903 Actinidia chinensis HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
CAN.G1478.11 Capsicum annuum HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
COL.COLO4_00393 Corchorus olitorius HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
COL.COLO4_00600 Corchorus olitorius HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
COL.COLO4_00936 Corchorus olitorius HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
COL.COLO4_02602 Corchorus olitorius HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
COL.COLO4_03023 Corchorus olitorius HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
COL.COLO4_03164 Corchorus olitorius HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
COL.COLO4_03177 Corchorus olitorius HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
Lj2A1239T190 Lonicera japonica HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
Lj2C1237G35 Lonicera japonica HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
Lj2C1239T59 Lonicera japonica HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 73.8
Lalb_Chr07g0192671 Lupinus albus HOM05D000680 ORTHO05D000738 1.0e-06 57.8 42 76.2
PSO706G0005 Papaver somniferum HOM05D000680 ORTHO05D000738 1.0e-06 57.8 75 49.3
Gohir.A09G102400 Gossypium hirsutum HOM05D000680 ORTHO05D000738 1.3e-06 57.4 29 96.6
arahy.Tifrunner.gnm1.ann1.31RLYT Arachis hypogaea HOM05D000680 ORTHO05D000738 1.7e-06 57.0 42 73.8
CAN.G219.24 Capsicum annuum HOM05D000680 ORTHO05D000738 1.7e-06 57.0 42 73.8
CDE05G1963 Ceratophyllum demersum HOM05D000680 ORTHO05D005619 1.7e-06 57.0 29 96.6
Sed0023375 Sechium edule HOM05D000680 ORTHO05D000738 1.7e-06 57.0 40 77.5
AUR62032524 Chenopodium quinoa HOM05D000680 ORTHO05D000738 2.3e-06 56.6 42 71.4
Lj2A1233T117 Lonicera japonica HOM05D000680 ORTHO05D000738 2.3e-06 56.6 42 71.4
Lj2C1235T31 Lonicera japonica HOM05D000680 ORTHO05D000738 2.3e-06 56.6 42 71.4
PSO548G0091 Papaver somniferum HOM05D000680 ORTHO05D000738 2.3e-06 56.6 42 73.8
CAN.G1185.7 Capsicum annuum HOM05D000680 ORTHO05D000738 3.0e-06 56.2 29 93.1
Lsat_1_v5_gn_4_40420 Lactuca sativa HOM05D000680 ORTHO05D005619 3.0e-06 56.2 29 93.1
Sopen12g014980 Solanum pennellii HOM05D000680 ORTHO05D000738 3.0e-06 56.2 42 73.8
COL.COLO4_00523 Corchorus olitorius HOM05D000680 ORTHO05D005619 3.9e-06 55.8 29 93.1
COL.COLO4_01856 Corchorus olitorius HOM05D000680 ORTHO05D000738 3.9e-06 55.8 29 93.1
HanXRQChr04g0100091 Helianthus annuus HOM05D000680 ORTHO05D005619 3.9e-06 55.8 28 96.4
Os06g0120732 Oryza sativa ssp. japonica HOM05D000680 ORTHO05D000738 3.9e-06 55.8 42 73.8
Gorai.013G048500 Gossypium raimondii HOM05D000680 ORTHO05D000738 5.1e-06 55.5 29 93.1
Potri.007G062122 Populus trichocarpa HOM05D000680 ORTHO05D000738 5.1e-06 55.5 39 76.9
SEGI_02135 Sequoiadendron giganteum HOM05D001133 ORTHO05D000941 5.1e-06 55.5 42 71.4
HPP92_028390 Vanilla planifolia HOM05D000680 ORTHO05D000738 5.1e-06 55.5 42 71.4
HPP92_028397 Vanilla planifolia HOM05D000680 ORTHO05D000738 5.1e-06 55.5 42 71.4
HPP92_028407 Vanilla planifolia HOM05D000680 ORTHO05D000738 5.1e-06 55.5 42 71.4
HanXRQChr13g0413561 Helianthus annuus HOM05D000680 ORTHO05D005619 6.6e-06 55.1 29 89.7
Lsat_1_v5_gn_4_56380 Lactuca sativa HOM05D000680 ORTHO05D000738 8.7e-06 54.7 42 71.4
Nitab4.5_0008209g0030 Nicotiana tabacum HOM05D000680 ORTHO05D000738 8.7e-06 54.7 42 71.4
Sopen10g009220 Solanum pennellii HOM05D000680 ORTHO05D000738 8.7e-06 54.7 29 89.7


User provided reference genes

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