Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold196G40999 Striga asiatica HOM05D000045 ORTHO05D005310 3.0e-79 298.5 156 100.0
SGA_v2.0_scaffold196G40998 Striga asiatica HOM05D000045 ORTHO05D000067 7.4e-30 134.4 103 75.7
QL04p050626 Quercus lobata HOM05D000045 ORTHO05D000067 1.5e-22 110.2 166 47.0
Migut.N01873 Erythranthe guttata HOM05D000045 ORTHO05D000067 2.2e-21 106.3 111 59.5
ClCG03G014180 Citrullus lanatus HOM05D000045 ORTHO05D000067 1.1e-20 104.0 154 44.2
CAN.G134.48 Capsicum annuum HOM05D000045 ORTHO05D000067 7.0e-20 101.3 108 57.4
AUR62001611 Chenopodium quinoa HOM05D000045 ORTHO05D000067 3.5e-19 99.0 144 44.4
SalBow6G3381 Salvia bowleyana HOM05D004830 ORTHO05D005310 5.9e-19 98.2 102 59.8
AUR62020169 Chenopodium quinoa HOM05D000045 ORTHO05D000067 1.3e-18 97.1 140 45.7
vmacro20843 Vaccinium macrocarpon HOM05D000045 ORTHO05D000067 1.0e-15 87.4 105 51.4
Gorai.011G224000 Gossypium raimondii HOM05D000045 ORTHO05D000067 1.4e-15 87.0 114 48.2
MD07G1054000 Malus domestica HOM05D000045 ORTHO05D000067 1.8e-15 86.7 105 52.4
Thecc.10G131800 Theobroma cacao HOM05D000045 ORTHO05D000067 3.0e-15 85.9 114 48.2
COL.COLO4_32859 Corchorus olitorius HOM05D000045 ORTHO05D000067 3.9e-15 85.5 113 47.8
Duzib114G0129 Durio zibethinus HOM05D000045 ORTHO05D000067 3.9e-15 85.5 114 48.2
LjContig00564g0008214 Lotus japonicus HOM05D000045 ORTHO05D000067 5.2e-15 85.1 140 37.9
Peaxi162Scf00647g00411 Petunia axillaris HOM05D000045 ORTHO05D000067 5.2e-15 85.1 86 59.3
Cfa010440 Carpinus fangiana HOM05D000045 ORTHO05D005310 6.7e-15 84.7 104 50.0
Gohir.A05G397800 Gossypium hirsutum HOM05D000045 ORTHO05D000067 1.5e-14 83.6 114 47.4
MSTRG.20481 Avicennia marina HOM05D000045 ORTHO05D000067 2.0e-14 83.2 83 60.2
Glyma.08G227500 Glycine max HOM05D000045 ORTHO05D000067 2.0e-14 83.2 104 47.1
Nitab4.5_0005056g0080 Nicotiana tabacum HOM05D000045 ORTHO05D000067 2.6e-14 82.8 92 54.3
Gohir.A10G192000 Gossypium hirsutum HOM05D000045 ORTHO05D000067 3.3e-14 82.4 114 47.4
Sopen01g040560 Solanum pennellii HOM05D000045 ORTHO05D000067 3.3e-14 82.4 90 57.8
Gorai.012G021400 Gossypium raimondii HOM05D000045 ORTHO05D000067 5.7e-14 81.6 114 46.5
MSTRG.17659 Avicennia marina HOM05D000045 ORTHO05D000067 7.4e-14 81.3 102 45.1
Nitab4.5_0001611g0130 Nicotiana tabacum HOM05D000045 ORTHO05D000067 9.7e-14 80.9 90 55.6
TWI15G1092 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 9.7e-14 80.9 103 49.5
CANSAT56G2476 Cannabis sativa HOM05D000045 ORTHO05D000067 2.8e-13 79.3 88 53.4
MD02G1265400 Malus domestica HOM05D004830 ORTHO05D005310 2.8e-13 79.3 109 48.6
Lalb_Chr03g0032401 Lupinus albus HOM05D000045 ORTHO05D000067 3.7e-13 79.0 101 50.5
Solyc01g096850.4 Solanum lycopersicum HOM05D000045 ORTHO05D000067 3.7e-13 79.0 90 55.6
Gohir.D04G018200 Gossypium hirsutum HOM05D000045 ORTHO05D000067 4.8e-13 78.6 114 45.6
Lj3g0010942 Lotus japonicus HOM05D000045 ORTHO05D000067 4.8e-13 78.6 110 45.5
Dinv03226 Davidia involucrata HOM05D000045 ORTHO05D000067 8.2e-13 77.8 92 54.3
DCAR_004548 Daucus carota HOM05D004830 ORTHO05D005310 1.1e-12 77.4 111 44.1
THA.LOC104800493 Tarenaya hassleriana HOM05D000045 ORTHO05D000067 1.1e-12 77.4 113 40.7
TPR.G19401 Trifolium pratense HOM05D000045 ORTHO05D000067 1.1e-12 77.4 97 45.4
Hma1.2p1_0233F.1_g098000 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 1.8e-12 76.6 91 52.7
Phvul.011G187200 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 1.8e-12 76.6 104 45.2
vmacro04110 Vaccinium macrocarpon HOM05D004830 ORTHO05D005310 2.4e-12 76.3 104 48.1
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.1e-12 75.9 91 52.7
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 3.1e-12 75.9 91 52.7
Prupe.2G058900 Prunus persica HOM05D000045 ORTHO05D000067 4.1e-12 75.5 94 53.2
Rhsim01G0121100 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.3e-12 75.1 152 38.2
Dinv13639 Davidia involucrata HOM05D004830 ORTHO05D005310 7.0e-12 74.7 91 50.5
Gohir.A03G031000 Gossypium hirsutum HOM05D000027 ORTHO05D002055 7.0e-12 74.7 109 44.0
SGA_v2.0_scaffold79G25517 Striga asiatica HOM05D000045 ORTHO05D005310 1.2e-11 73.9 104 44.2
EL10Ac7g16221 Beta vulgaris HOM05D000045 ORTHO05D000067 2.6e-11 72.8 94 47.9
GSVIVG01027346001 Vitis vinifera HOM05D004830 ORTHO05D005310 4.5e-11 72.0 84 52.4
Eucgr.G02634 Eucalyptus grandis HOM05D000045 ORTHO05D000067 7.7e-11 71.2 95 45.3
Manes.07G084600 Manihot esculenta HOM05D000045 ORTHO05D000067 7.7e-11 71.2 91 50.5
RhsimUnG0022700 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.7e-11 71.2 204 28.9
RhsimUnG0247000 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.7e-11 71.2 204 28.9
Atru.chr12.1141 Acer truncatum HOM05D000045 ORTHO05D000067 1.0e-10 70.9 92 51.1
Thhalv10001905m.g Eutrema salsugineum HOM05D000045 ORTHO05D000067 1.0e-10 70.9 117 37.6
Glyma.02G273500 Glycine max HOM05D000045 ORTHO05D000067 1.0e-10 70.9 114 34.2
Actinidia37189 Actinidia chinensis HOM05D004830 ORTHO05D005310 1.3e-10 70.5 138 34.1
CiPaw.13G047500 Carya illinoinensis HOM05D000045 ORTHO05D000067 1.3e-10 70.5 90 50.0
Potri.008G011800 Populus trichocarpa HOM05D000045 ORTHO05D000067 1.3e-10 70.5 92 50.0
Ciclev10000255m.g Citrus clementina HOM05D000045 ORTHO05D000067 1.7e-10 70.1 92 48.9
Hma1.2p1_0218F.1_g092600 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 1.7e-10 70.1 138 34.1
Dinv05235 Davidia involucrata HOM05D000045 ORTHO05D000067 2.2e-10 69.7 138 34.1
Psat0s1748g0080 Pisum sativum HOM05D000045 ORTHO05D000067 2.9e-10 69.3 113 38.1
PGR119G0427 Punica granatum HOM05D000045 ORTHO05D000067 2.9e-10 69.3 91 42.9
Glyma.15G222102 Glycine max HOM05D004830 ORTHO05D005310 3.8e-10 68.9 90 48.9
CSS0018867 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.0e-10 68.6 138 33.3
CSS0049479 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.0e-10 68.6 138 33.3
Phvul.008G208300 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 5.0e-10 68.6 114 35.1
FAN04G0752 Fragaria x ananassa HOM05D000045 ORTHO05D000067 6.5e-10 68.2 116 44.0
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 8.5e-10 67.8 91 48.4
TAR623G0545 Trochodendron aralioides HOM05D001075 ORTHO05D001779 8.5e-10 67.8 131 35.9
TAR633G1657 Trochodendron aralioides HOM05D004830 ORTHO05D005310 8.5e-10 67.8 137 32.1
Dinv32075 Davidia involucrata HOM05D000045 ORTHO05D000067 1.1e-09 67.4 92 42.4
Sp4g09780 Schrenkiella parvula HOM05D000045 ORTHO05D000067 1.1e-09 67.4 117 36.8
SpUn0012_0050 Schrenkiella parvula HOM05D000045 ORTHO05D000067 1.1e-09 67.4 117 36.8
SpUn0122_0020 Schrenkiella parvula HOM05D000045 ORTHO05D000067 1.1e-09 67.4 117 36.8
Hund18829 Selenicereus undatus HOM05D000045 ORTHO05D000067 1.1e-09 67.4 106 40.6
Cpa.g.sc103.69 Carica papaya HOM05D004830 ORTHO05D000067 1.5e-09 67.0 113 39.8
Glyma.14G043900 Glycine max HOM05D000045 ORTHO05D000067 1.5e-09 67.0 114 36.0
Ca_16238_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000067 1.9e-09 66.6 107 41.1
Ca_24121_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000067 2.5e-09 66.2 85 49.4
Nitab4.5_0000271g0200 Nicotiana tabacum HOM05D000045 ORTHO05D000067 2.5e-09 66.2 91 41.8
Solyc06g073670.4 Solanum lycopersicum HOM05D000045 ORTHO05D000067 2.5e-09 66.2 84 44.0
FvH4_7g04941 Fragaria vesca HOM05D000045 ORTHO05D000067 3.2e-09 65.9 93 48.4
Sopen06g030080 Solanum pennellii HOM05D000045 ORTHO05D000067 3.2e-09 65.9 84 44.0
GSVIVG01037455001 Vitis vinifera HOM05D000045 ORTHO05D000067 3.2e-09 65.9 138 32.6
Lj6g0022384 Lotus japonicus HOM05D000045 ORTHO05D000067 4.2e-09 65.5 95 40.0
Peaxi162Scf00526g00068 Petunia axillaris HOM05D000045 ORTHO05D000067 4.2e-09 65.5 84 45.2
RcHm_v2.0_Chr1g0331031 Rosa chinensis HOM05D000045 ORTHO05D000067 4.2e-09 65.5 93 48.4
CAN.G65.213 Capsicum annuum HOM05D000045 ORTHO05D000067 5.5e-09 65.1 91 40.7
Duzib170G0988 Durio zibethinus HOM05D000045 ORTHO05D000067 5.5e-09 65.1 94 42.6
GSVIVG01025859001 Vitis vinifera HOM05D004830 ORTHO05D005310 5.5e-09 65.1 87 43.7
Nitab4.5_0002184g0130 Nicotiana tabacum HOM05D000045 ORTHO05D000067 7.2e-09 64.7 91 41.8
Rhsim13G0200800 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.2e-09 64.7 92 41.3
PSO339G0029 Papaver somniferum HOM05D000045 ORTHO05D000067 9.4e-09 64.3 131 35.1
PSO384G0901 Papaver somniferum HOM05D000045 ORTHO05D000067 9.4e-09 64.3 131 35.1
Atru.chr3.3011 Acer truncatum HOM05D000045 ORTHO05D000067 1.2e-08 63.9 91 41.8
CSS0048806 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.2e-08 63.9 89 42.7
arahy.Tifrunner.gnm1.ann1.F6YBSJ Arachis hypogaea HOM05D004830 ORTHO05D005310 2.1e-08 63.2 84 44.0
arahy.Tifrunner.gnm1.ann1.W6VT7I Arachis hypogaea HOM05D004830 ORTHO05D005310 2.1e-08 63.2 84 44.0
Ciclev10018084m.g Citrus clementina HOM05D000045 ORTHO05D000067 2.1e-08 63.2 92 41.3
Glyma.20G053500 Glycine max HOM05D000045 ORTHO05D000067 2.1e-08 63.2 91 39.6
TAR369G0694 Trochodendron aralioides HOM05D004830 ORTHO05D005310 3.6e-08 62.4 85 44.7
Prupe.5G010000 Prunus persica HOM05D000045 ORTHO05D000067 6.1e-08 61.6 113 35.4
Phvul.L004237 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 8.0e-08 61.2 91 39.6
Thecc.09G337000 Theobroma cacao HOM05D000045 ORTHO05D000067 8.0e-08 61.2 91 40.7
Ah.08g222800 Amaranthus hybridus HOM05D000045 ORTHO05D000067 1.0e-07 60.8 84 42.9
CiPaw.14G091900 Carya illinoinensis HOM05D000045 ORTHO05D000067 1.0e-07 60.8 91 38.5
Haze_23661 Corylus avellana HOM05D000045 ORTHO05D000067 1.0e-07 60.8 113 34.5
Gohir.D03G133000 Gossypium hirsutum HOM05D000045 ORTHO05D000067 1.4e-07 60.5 92 41.3
PSO591G0293 Papaver somniferum HOM05D004830 ORTHO05D005310 1.4e-07 60.5 62 51.6
CDE04G2621 Ceratophyllum demersum HOM05D000045 ORTHO05D000067 1.8e-07 60.1 66 57.6
Gorai.003G140100 Gossypium raimondii HOM05D000045 ORTHO05D000067 1.8e-07 60.1 92 41.3
Lsat_1_v5_gn_3_115961 Lactuca sativa HOM05D000045 ORTHO05D000067 2.3e-07 59.7 92 38.0
PSO832G0423 Papaver somniferum HOM05D004830 ORTHO05D005310 2.3e-07 59.7 62 50.0
Aqoxy4G00834 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 3.0e-07 59.3 138 31.9
CANSAT54G2310 Cannabis sativa HOM05D000045 ORTHO05D000067 3.0e-07 59.3 100 37.0
Duzib168G0153 Durio zibethinus HOM05D000045 ORTHO05D000067 3.0e-07 59.3 123 34.1
MD06G1010400 Malus domestica HOM05D000045 ORTHO05D000067 3.0e-07 59.3 113 33.6
MBI19_g47438_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 4.0e-07 58.9 64 56.2
MD16G1283900 Malus domestica HOM05D000045 ORTHO05D000067 4.0e-07 58.9 84 40.5
Potri.009G158400 Populus trichocarpa HOM05D000045 ORTHO05D000067 4.0e-07 58.9 91 40.7
Lalb_Chr10g0105861 Lupinus albus HOM05D000045 ORTHO05D000067 5.2e-07 58.5 113 33.6
Potri.004G196300 Populus trichocarpa HOM05D000045 ORTHO05D000067 6.7e-07 58.2 101 37.6
Sabra09G0124000 Salix brachista HOM05D000045 ORTHO05D000067 8.8e-07 57.8 101 38.6
Sed0013380 Sechium edule HOM05D000045 ORTHO05D000067 8.8e-07 57.8 106 36.8
Manes.11G111500 Manihot esculenta HOM05D000045 ORTHO05D000067 1.2e-06 57.4 113 35.4
QL01p020366 Quercus lobata HOM05D000045 ORTHO05D000067 1.2e-06 57.4 114 34.2
Sc12g0000520 Simmondsia chinensis HOM05D000045 ORTHO05D000067 1.2e-06 57.4 91 38.5
Carub.0004s0760 Capsella rubella HOM05D000045 ORTHO05D000067 1.5e-06 57.0 92 38.0
CARHR119430 Cardamine hirsuta HOM05D000045 ORTHO05D000067 1.5e-06 57.0 93 36.6
Gohir.A03G035200 Gossypium hirsutum HOM05D000045 ORTHO05D000067 2.0e-06 56.6 98 40.8
HanXRQChr03g0091681 Helianthus annuus HOM05D000045 ORTHO05D000067 2.0e-06 56.6 113 33.6
Nn7g37285 Nelumbo nucifera HOM05D004830 ORTHO05D005310 2.0e-06 56.6 64 53.1
SEGI_37187 Sequoiadendron giganteum HOM05D004830 ORTHO05D005310 2.0e-06 56.6 64 50.0
Ca_06147_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000067 2.6e-06 56.2 91 40.7
DCAR_014362 Daucus carota HOM05D004830 ORTHO05D005310 2.6e-06 56.2 105 30.5
Gohir.A08G196200 Gossypium hirsutum HOM05D000045 ORTHO05D000067 2.6e-06 56.2 93 36.6
Gohir.D08G213300 Gossypium hirsutum HOM05D000045 ORTHO05D000067 2.6e-06 56.2 93 36.6
Migut.N02416 Erythranthe guttata HOM05D000045 ORTHO05D000067 3.3e-06 55.8 84 40.5
Gorai.004G227400 Gossypium raimondii HOM05D000045 ORTHO05D000067 3.3e-06 55.8 97 38.1
RcHm_v2.0_Chr1g0335301 Rosa chinensis HOM05D000045 ORTHO05D000067 3.3e-06 55.8 92 38.0
Aa31LG5G8500 Aethionema arabicum HOM05D000045 ORTHO05D000067 4.4e-06 55.5 92 40.2
COL.COLO4_33470 Corchorus olitorius HOM05D004830 ORTHO05D005310 4.4e-06 55.5 64 53.1
FvH4_7g06621 Fragaria vesca HOM05D000045 ORTHO05D000067 4.4e-06 55.5 92 38.0
ATR0307G071 Amborella trichopoda HOM05D004830 ORTHO05D005310 9.7e-06 54.3 64 53.1
A03p26760 Brassica napus HOM05D000045 ORTHO05D000067 9.7e-06 54.3 92 38.0
C03p32060 Brassica napus HOM05D000045 ORTHO05D000067 9.7e-06 54.3 92 38.0
BraA03t11887Z Brassica rapa HOM05D000045 ORTHO05D000067 9.7e-06 54.3 92 38.0
MELO3C015625.2 Cucumis melo HOM05D000045 ORTHO05D000067 9.7e-06 54.3 106 34.9
CsaV3_1G042070 Cucumis sativus L. HOM05D000045 ORTHO05D000067 9.7e-06 54.3 106 34.9


User provided reference genes

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