Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 1.5e-275 952.2 485 100.0
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 6.6e-210 734.2 536 69.8
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 4.3e-209 731.5 549 68.3
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 6.8e-207 724.2 526 69.2
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 6.8e-207 724.2 543 67.6
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 1.5e-206 723.0 519 70.5
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 2.9e-205 718.8 541 66.7
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 6.4e-205 717.6 527 69.1
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 9.2e-204 713.8 545 66.6
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 3.9e-202 708.4 550 66.9
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 8.6e-202 707.2 541 66.4
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.5e-201 706.4 541 66.0
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 4.3e-201 704.9 541 65.8
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 7.3e-201 704.1 541 66.5
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 2.1e-200 702.6 539 67.2
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.2e-200 701.0 549 65.4
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.1e-199 700.3 541 65.8
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 2.3e-199 699.1 551 64.6
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.3e-199 699.1 547 66.5
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 8.9e-199 697.2 541 66.5
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.2e-198 696.8 541 66.4
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.5e-198 696.4 526 67.5
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 5.8e-198 694.5 549 65.2
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 1.7e-197 693.0 545 65.1
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 2.9e-197 692.2 419 77.8
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 2.9e-197 692.2 415 79.8
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 6.4e-197 691.0 536 65.3
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 8.3e-197 690.6 519 66.9
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 3.2e-196 688.7 545 64.4
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 3.2e-196 688.7 536 65.3
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 3.2e-196 688.7 529 66.0
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 9.2e-196 687.2 519 66.7
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.2e-195 686.8 536 65.3
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 2.1e-195 686.0 541 64.7
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.7e-195 685.6 548 64.4
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.5e-195 685.3 519 66.7
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 7.8e-195 684.1 531 65.0
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.3e-194 682.6 524 66.0
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 2.3e-194 682.6 549 62.7
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 2.3e-194 682.6 534 65.5
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 3.9e-194 681.8 542 65.1
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 5.1e-194 681.4 519 66.3
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 5.1e-194 681.4 415 77.8
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 5.1e-194 681.4 529 66.0
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 1.1e-193 680.2 537 65.7
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.9e-193 679.5 519 66.1
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 2.5e-193 679.1 534 64.6
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 3.3e-193 678.7 536 63.8
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 3.3e-193 678.7 540 64.8
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 5.6e-193 677.9 537 65.2
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 9.5e-193 677.2 540 65.0
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 1.2e-192 676.8 537 64.4
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.4e-191 673.3 537 63.5
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 1.4e-191 673.3 537 63.5
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 1.4e-191 673.3 545 63.9
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.8e-191 672.9 545 63.9
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 4.0e-191 671.8 415 76.6
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 4.0e-191 671.8 554 62.5
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 5.2e-191 671.4 554 62.5
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.0e-190 669.5 415 76.6
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 3.4e-190 668.7 546 63.6
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 5.8e-190 667.9 546 63.7
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 3.8e-189 665.2 537 62.6
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.9e-188 662.9 529 62.6
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 4.1e-188 661.8 531 64.0
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.2e-187 660.2 525 63.8
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 1.6e-187 659.8 550 60.9
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 2.7e-187 659.1 542 62.2
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 7.8e-187 657.5 537 62.9
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 1.0e-186 657.1 500 67.6
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 3.0e-186 655.6 537 62.8
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 3.9e-186 655.2 534 63.3
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 6.6e-186 654.4 533 62.7
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 8.6e-186 654.1 531 62.3
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.1e-185 653.7 538 62.3
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 1.5e-185 653.3 547 60.3
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 1.9e-185 652.9 533 62.9
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 5.6e-185 651.4 520 62.9
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 7.3e-185 651.0 533 63.0
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 2.1e-184 649.4 390 79.7
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 2.1e-184 649.4 538 61.5
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 3.6e-184 648.7 537 62.6
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 3.6e-184 648.7 538 61.2
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 3.6e-184 648.7 544 61.9
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 3.6e-184 648.7 540 61.7
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 6.2e-184 647.9 533 62.7
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 8.1e-184 647.5 533 62.5
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 4.0e-183 645.2 546 61.4
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 1.2e-182 643.7 545 62.0
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 1.2e-182 643.7 538 60.8
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.2e-182 643.7 537 61.3
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 2.0e-182 642.9 529 61.4
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 1.3e-181 640.2 537 60.7
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 8.4e-181 637.5 544 61.4
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 1.4e-180 636.7 418 73.7
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 1.9e-180 636.3 547 60.1
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 9.3e-180 634.0 533 64.5
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.1e-179 632.9 415 72.5
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 3.5e-179 632.1 626 55.0
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 6.0e-179 631.3 534 61.0
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 5.1e-178 628.2 549 58.8
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.1e-178 628.2 563 57.5
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 8.7e-178 627.5 524 61.3
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.5e-177 626.7 549 59.4
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 3.3e-177 625.5 549 60.1
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 4.3e-177 625.2 543 59.5
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 4.0e-175 618.6 549 59.4
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 4.0e-175 618.6 513 63.2
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 2.6e-174 615.9 504 62.3
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 7.6e-174 614.4 530 58.9
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 7.6e-174 614.4 530 58.9
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 1.7e-173 613.2 539 58.8
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 5.4e-172 608.2 523 60.2
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 1.6e-171 606.7 520 60.4
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 1.3e-170 603.6 505 61.8
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 3.0e-170 602.4 505 61.8
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 6.7e-170 601.3 537 59.2
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 2.1e-163 579.7 500 59.8
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 3.5e-163 578.9 496 60.7
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 2.8e-160 569.3 555 53.9
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 1.4e-159 567.0 551 53.5
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.7e-155 552.7 556 54.0
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 4.6e-155 552.0 484 59.3
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 6.0e-155 551.6 519 56.3
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.1e-139 500.0 417 58.5
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 1.8e-135 486.9 417 56.6
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.7e-133 480.3 415 57.6
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.0e-129 466.8 542 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.0e-125 454.5 430 56.7
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 5.5e-124 448.7 509 48.9
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 5.2e-122 442.2 419 53.5
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.2e-118 431.0 424 54.5
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 1.7e-117 427.2 439 53.8
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.5e-116 424.1 424 52.4
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 9.4e-116 421.4 541 45.5
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 3.6e-115 419.5 389 58.4
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 9.8e-113 411.4 367 58.9
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 4.1e-111 406.0 350 61.4
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 5.9e-102 375.6 346 59.2
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.3e-98 363.6 319 54.9
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 2.8e-91 340.1 466 42.3
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 5.8e-89 332.4 433 44.6
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 1.9e-60 237.7 224 56.2
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 3.3e-60 236.9 459 32.5
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 4.6e-54 216.5 321 43.6
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 1.3e-48 198.4 491 31.4
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 8.4e-48 195.7 430 31.9
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 1.1e-44 185.3 91 91.2
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.0e-41 174.5 105 74.3
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 4.5e-41 173.3 97 82.5
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 9.3e-39 165.6 263 38.4
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.6e-38 164.9 118 68.6
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.5e-36 158.3 396 30.1
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 3.3e-36 157.1 175 53.1
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 1.3e-35 155.2 190 43.2
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 9.0e-34 149.1 155 55.5
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 9.7e-28 129.0 66 90.9
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 2.6e-20 104.4 86 55.8
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.5e-15 87.8 40 97.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 2.3e-13 81.3 48 77.1
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 3.9e-13 80.5 40 87.5
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.1e-10 72.4 138 34.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.2e-09 68.9 32 93.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 1.6e-09 68.6 33 87.9
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 2.6e-09 67.8 80 48.8
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 8.5e-08 62.8 109 40.4
Sp2g12920 Schrenkiella parvula HOM05D000992 ORTHO05D001928 4.2e-07 60.5 241 24.9
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 7.2e-07 59.7 256 24.2
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 7.2e-07 59.7 256 24.2
CDE06G2114 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 7.2e-07 59.7 186 24.2
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 9.4e-07 59.3 256 23.4
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 9.4e-07 59.3 256 23.4
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 2.1e-06 58.2 256 23.4
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 2.1e-06 58.2 256 23.8
PGR031G3438 Punica granatum HOM05D002999 ORTHO05D003137 3.6e-06 57.4 192 24.0
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 8.0e-06 56.2 254 23.6
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 8.0e-06 56.2 171 24.6


User provided reference genes

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