Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 1.6e-166 589.3 303 100.0
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 2.4e-154 548.9 300 93.0
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.3e-143 511.9 303 84.2
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 2.6e-140 502.3 299 84.6
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 7.2e-138 494.2 303 82.2
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 1.2e-137 493.4 300 81.3
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 2.1e-137 492.7 300 82.3
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 2.1e-137 492.7 300 82.3
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 4.6e-137 491.5 300 81.3
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 7.9e-137 490.7 300 81.3
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.0e-136 490.3 303 80.9
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.0e-136 488.8 338 75.4
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 3.9e-136 488.4 303 81.2
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 3.9e-136 488.4 300 80.3
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 5.1e-136 488.0 300 81.0
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 8.7e-136 487.3 303 80.9
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.1e-135 486.9 302 81.1
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.9e-135 486.1 300 80.3
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 2.5e-135 485.7 300 80.7
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 2.5e-135 485.7 300 80.7
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.3e-135 485.3 300 80.3
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 7.4e-135 484.2 300 79.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 9.7e-135 483.8 300 79.3
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 9.7e-135 483.8 316 77.2
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 9.7e-135 483.8 300 80.3
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 2.2e-134 482.6 303 80.9
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.8e-134 482.3 300 79.0
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 1.4e-133 479.9 300 79.7
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.8e-133 479.6 301 81.4
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 2.4e-133 479.2 303 80.5
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 5.3e-133 478.0 303 79.9
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 6.9e-133 477.6 303 79.5
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.2e-132 476.9 301 78.1
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 2.6e-132 475.7 301 78.4
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 3.4e-132 475.3 303 80.5
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 3.4e-132 475.3 302 77.8
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 4.5e-132 474.9 301 80.4
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.0e-131 473.8 302 77.5
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.0e-131 473.8 303 78.9
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.7e-131 473.0 303 76.9
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 8.5e-131 470.7 302 77.5
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.9e-130 469.5 303 76.2
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 2.5e-130 469.2 303 78.2
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 2.5e-130 469.2 301 77.1
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 3.2e-130 468.8 303 77.9
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 4.2e-130 468.4 303 76.9
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 5.5e-130 468.0 303 77.2
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 5.5e-130 468.0 299 77.9
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 5.5e-130 468.0 300 76.7
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 9.4e-130 467.2 303 75.9
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 9.4e-130 467.2 303 77.2
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 3.6e-129 465.3 303 76.9
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 4.6e-129 464.9 301 75.4
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.6e-129 464.9 296 78.0
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 4.6e-129 464.9 303 76.2
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 6.1e-129 464.5 303 76.6
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.4e-128 463.4 303 77.6
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.4e-128 463.4 303 75.6
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 2.3e-128 462.6 303 78.2
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.3e-128 462.6 301 77.1
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 3.0e-128 462.2 305 76.7
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 3.9e-128 461.8 303 76.2
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.9e-128 461.8 303 75.2
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 5.1e-128 461.5 303 75.9
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 5.1e-128 461.5 303 77.9
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 5.1e-128 461.5 303 77.2
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 6.7e-128 461.1 303 75.6
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 6.7e-128 461.1 303 75.2
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 8.8e-128 460.7 303 77.6
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 8.8e-128 460.7 301 75.1
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 2.0e-127 459.5 303 77.2
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 2.6e-127 459.1 303 76.9
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 4.4e-127 458.4 303 75.9
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 5.7e-127 458.0 299 76.6
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 7.4e-127 457.6 303 76.2
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 9.7e-127 457.2 303 74.9
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.3e-126 456.8 302 76.5
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.7e-126 456.4 303 74.6
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.7e-126 456.4 302 76.2
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 1.7e-126 456.4 302 76.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 1.7e-126 456.4 302 76.5
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.7e-126 456.4 300 77.7
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.7e-126 456.4 303 75.2
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 3.7e-126 455.3 303 77.2
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 4.8e-126 454.9 303 74.9
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 8.2e-126 454.1 303 75.6
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.1e-125 453.8 303 75.2
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.4e-125 453.4 301 74.8
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.8e-125 453.0 303 75.9
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 2.4e-125 452.6 300 75.3
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 3.1e-125 452.2 303 74.9
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 4.1e-125 451.8 303 75.9
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 4.1e-125 451.8 303 74.6
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.2e-124 450.3 303 76.6
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 2.0e-124 449.5 300 74.7
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.0e-123 447.2 303 73.6
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.2e-123 446.0 303 74.3
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.9e-123 445.7 300 72.7
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 3.8e-123 445.3 299 75.6
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.5e-122 442.6 303 73.3
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.5e-122 442.6 321 71.0
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 3.2e-122 442.2 316 71.8
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 7.2e-122 441.0 300 73.7
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.2e-121 440.3 299 73.2
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 3.6e-121 438.7 301 74.1
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 7.9e-121 437.6 300 73.0
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.0e-120 437.2 302 72.8
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.4e-120 436.8 300 72.3
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 3.9e-120 435.3 340 67.1
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 3.3e-119 432.2 309 70.9
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 4.4e-119 431.8 298 72.1
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 6.3e-118 427.9 303 71.9
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 3.1e-117 425.6 303 71.6
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 9.1e-117 424.1 312 71.5
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 1.0e-115 420.6 242 84.3
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.5e-114 416.8 259 79.2
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 4.0e-112 408.7 252 79.4
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 1.2e-111 407.1 302 67.2
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.7e-110 403.3 290 67.9
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 3.7e-110 402.1 290 69.0
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 1.6e-108 396.7 288 68.4
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 8.5e-107 391.0 340 59.7
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 4.2e-106 388.7 301 67.8
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 7.2e-106 387.9 300 67.0
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 5.9e-100 368.2 303 64.0
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 2.1e-97 359.8 299 60.9
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.4e-95 352.4 209 79.9
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.1e-93 347.4 305 59.3
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.4e-93 346.3 509 42.6
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.6e-92 343.6 300 62.3
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 1.3e-91 340.5 209 78.9
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.4e-87 325.9 217 76.5
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 3.4e-87 325.9 288 55.9
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 2.5e-82 309.7 200 77.5
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 8.3e-78 294.7 246 65.9
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 5.2e-72 275.4 304 50.7
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.0e-71 273.5 246 55.7
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.4e-69 266.5 245 61.2
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 5.8e-63 245.4 154 81.2
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 1.1e-53 214.5 285 42.5
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 4.8e-49 199.1 274 40.5
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 6.4e-46 188.7 101 91.1
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 2.7e-44 183.3 108 80.6
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.9e-43 179.5 173 53.8
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.1e-34 151.4 199 48.2
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.4e-32 143.7 84 82.1
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.1e-29 134.8 102 67.6
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 6.9e-24 115.5 283 27.9
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 2.0e-23 114.0 70 81.4
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.6e-20 104.4 83 66.3
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.6e-20 104.4 106 58.5
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 6.1e-20 102.4 63 76.2
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 5.7e-18 95.9 162 38.9
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 5.7e-18 95.9 86 59.3
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.8e-16 90.9 149 38.3
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 5.3e-16 89.4 121 46.3
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 1.2e-07 61.6 54 64.8
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 2.2e-06 57.4 40 67.5
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 2.2e-06 57.4 63 54.0
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 5.0e-06 56.2 46 54.3


User provided reference genes

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