Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold196G40939 Striga asiatica HOM05D000007 ORTHO05D010595 4.5e-64 247.7 118 100.0
SGA_v2.0_scaffold84G26553 Striga asiatica HOM05D012911 ORTHO05D010595 1.2e-32 143.3 92 70.7
SGA_v2.0_scaffold84G26560 Striga asiatica HOM05D012911 ORTHO05D010595 6.6e-23 110.9 93 60.2
Gorai.011G135900 Gossypium raimondii HOM05D000007 ORTHO05D000039 9.6e-14 80.5 91 47.3
Gohir.D10G123400 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.1e-13 79.3 92 46.7
Gohir.D10G123300 Gossypium hirsutum HOM05D000007 ORTHO05D000039 3.7e-13 78.6 91 46.2
Thecc.09G278300 Theobroma cacao HOM05D000007 ORTHO05D000039 3.7e-13 78.6 91 49.5
Duzib150G0476 Durio zibethinus HOM05D000007 ORTHO05D000039 4.8e-13 78.2 91 48.4
Gohir.A10G143700 Gossypium hirsutum HOM05D000007 ORTHO05D000039 4.8e-13 78.2 91 46.2
Thecc.10G169000 Theobroma cacao HOM05D000007 ORTHO05D000039 1.5e-11 73.2 90 42.2
Thecc.10G169400 Theobroma cacao HOM05D000007 ORTHO05D000039 1.5e-11 73.2 90 42.2
Gorai.011G136300 Gossypium raimondii HOM05D000007 ORTHO05D000039 9.9e-11 70.5 85 45.9
Manes.04G093401 Manihot esculenta HOM05D000007 ORTHO05D000039 3.8e-10 68.6 74 45.9
Gohir.D10G240616 Gossypium hirsutum HOM05D000007 ORTHO05D000039 4.9e-10 68.2 128 40.6
Gohir.D10G241300 Gossypium hirsutum HOM05D000007 ORTHO05D000039 4.9e-10 68.2 128 40.6
SGA_v2.0_scaffold181G39791 Striga asiatica HOM05D011185 ORTHO05D010595 6.4e-10 67.8 82 48.8
TWI31G1306 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 6.4e-10 67.8 75 42.7
SGA_v2.0_scaffold7G03729 Striga asiatica HOM05D012724 ORTHO05D010595 8.4e-10 67.4 82 48.8
Medtr4g117550 Medicago truncatula HOM05D000007 ORTHO05D000039 1.4e-09 66.6 87 42.5
Aqoxy4G00863 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 1.9e-09 66.2 77 42.9
Manes.04G077417 Manihot esculenta HOM05D000007 ORTHO05D000039 1.9e-09 66.2 74 45.9
Manes.04G081134 Manihot esculenta HOM05D000007 ORTHO05D000039 1.9e-09 66.2 74 45.9
Manes.04G082196 Manihot esculenta HOM05D000007 ORTHO05D000039 1.9e-09 66.2 74 45.9
Thecc.10G168700 Theobroma cacao HOM05D000007 ORTHO05D000039 1.9e-09 66.2 84 40.5
Gohir.A10G227233 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.4e-09 65.9 108 39.8
Manes.04G093500 Manihot esculenta HOM05D000007 ORTHO05D000039 2.4e-09 65.9 74 44.6
Medtr2g021800 Medicago truncatula HOM05D000007 ORTHO05D000039 2.4e-09 65.9 106 37.7
SGA_v2.0_scaffold7G04010 Striga asiatica HOM05D012724 ORTHO05D010595 2.4e-09 65.9 91 44.0
TWI79G0220 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 2.4e-09 65.9 87 43.7
Gorai.011G276500 Gossypium raimondii HOM05D000007 ORTHO05D000039 4.2e-09 65.1 129 41.1
Manes.04G083789 Manihot esculenta HOM05D000007 ORTHO05D000039 4.2e-09 65.1 74 45.9
Manes.04G084320 Manihot esculenta HOM05D000007 ORTHO05D000039 4.2e-09 65.1 74 45.9
TWI60G1487 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 4.2e-09 65.1 79 44.3
SGA_v2.0_scaffold7G03555 Striga asiatica HOM05D012911 ORTHO05D010595 5.5e-09 64.7 79 50.6
Gohir.A10G227500 Gossypium hirsutum HOM05D000007 ORTHO05D000039 7.1e-09 64.3 105 41.0
Manes.02G207000 Manihot esculenta HOM05D000007 ORTHO05D000039 7.1e-09 64.3 74 44.6
Oeu028341.1 Olea europaea HOM05D000007 ORTHO05D000039 7.1e-09 64.3 99 37.4
COL.COLO4_22623 Corchorus olitorius HOM05D000007 ORTHO05D000039 9.3e-09 63.9 81 45.7
Gohir.A10G225666 Gossypium hirsutum HOM05D000007 ORTHO05D000039 9.3e-09 63.9 94 42.6
Gorai.011G281200 Gossypium raimondii HOM05D000007 ORTHO05D000039 9.3e-09 63.9 108 40.7
Manes.04G079541 Manihot esculenta HOM05D000007 ORTHO05D000039 9.3e-09 63.9 76 46.1
TWI79G1037 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 9.3e-09 63.9 87 42.5
Gohir.D10G241700 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.6e-08 63.2 108 38.9
Manes.04G077948 Manihot esculenta HOM05D000007 ORTHO05D000039 1.6e-08 63.2 74 43.2
Thecc.10G168300 Theobroma cacao HOM05D000007 ORTHO05D000039 1.6e-08 63.2 89 40.4
Gohir.D10G241100 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.7e-08 62.4 100 40.0
Gorai.011G276100 Gossypium raimondii HOM05D000007 ORTHO05D000039 2.7e-08 62.4 100 40.0
Medtr2g022000 Medicago truncatula HOM05D000007 ORTHO05D000039 2.7e-08 62.4 106 35.8
Gohir.D10G238608 Gossypium hirsutum HOM05D000007 ORTHO05D000039 3.5e-08 62.0 116 35.3
Manes.04G081665 Manihot esculenta HOM05D000007 ORTHO05D000039 3.5e-08 62.0 78 44.9
Medtr5g096630 Medicago truncatula HOM05D000007 ORTHO05D000039 3.5e-08 62.0 92 40.2
Gohir.A10G225532 Gossypium hirsutum HOM05D000007 ORTHO05D000039 4.6e-08 61.6 95 41.1
Gorai.011G276900 Gossypium raimondii HOM05D000007 ORTHO05D000039 4.6e-08 61.6 100 41.0
Manes.04G085700 Manihot esculenta HOM05D000007 ORTHO05D000039 4.6e-08 61.6 74 43.2
Gohir.D10G238340 Gossypium hirsutum HOM05D000007 ORTHO05D000039 6.0e-08 61.2 93 44.1
Gohir.D10G241000 Gossypium hirsutum HOM05D000007 ORTHO05D000039 6.0e-08 61.2 108 39.8
Gorai.011G274400 Gossypium raimondii HOM05D000007 ORTHO05D000039 6.0e-08 61.2 116 35.3
Gorai.011G276700 Gossypium raimondii HOM05D000007 ORTHO05D000039 6.0e-08 61.2 108 39.8
Gorai.011G277300 Gossypium raimondii HOM05D000007 ORTHO05D000039 6.0e-08 61.2 108 39.8
Gorai.011G277500 Gossypium raimondii HOM05D000007 ORTHO05D000039 6.0e-08 61.2 108 39.8
Medtr4g102410 Medicago truncatula HOM05D000007 ORTHO05D000039 6.0e-08 61.2 89 39.3
Medtr7g069550 Medicago truncatula HOM05D000007 ORTHO05D000039 6.0e-08 61.2 95 35.8
SGA_v2.0_scaffold7G03853 Striga asiatica HOM05D012911 ORTHO05D010595 6.0e-08 61.2 78 44.9
SGA_v2.0_scaffold7G03939 Striga asiatica HOM05D012911 ORTHO05D010595 6.0e-08 61.2 81 49.4
Manes.04G076886 Manihot esculenta HOM05D000007 ORTHO05D000039 7.9e-08 60.8 74 43.2
Manes.04G082727 Manihot esculenta HOM05D000007 ORTHO05D000039 7.9e-08 60.8 76 44.7
Manes.04G083258 Manihot esculenta HOM05D000007 ORTHO05D000039 7.9e-08 60.8 76 44.7
Thecc.10G169200 Theobroma cacao HOM05D000007 ORTHO05D000039 7.9e-08 60.8 85 40.0
Gorai.011G281100 Gossypium raimondii HOM05D000007 ORTHO05D000039 1.0e-07 60.5 100 39.0
Manes.14G121600 Manihot esculenta HOM05D000007 ORTHO05D000039 1.0e-07 60.5 75 42.7
Medtr6g461660 Medicago truncatula HOM05D000007 ORTHO05D000039 1.0e-07 60.5 97 42.3
TWI60G0843 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.0e-07 60.5 87 44.8
Cfa000498 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.8e-07 59.7 104 38.5
Gohir.D10G240516 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.8e-07 59.7 106 38.7
Gohir.D10G241008 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.8e-07 59.7 106 38.7
Gorai.011G273600 Gossypium raimondii HOM05D000007 ORTHO05D000039 1.8e-07 59.7 93 43.0
Manes.04G078479 Manihot esculenta HOM05D000007 ORTHO05D000039 1.8e-07 59.7 76 43.4
SGA_v2.0_scaffold39G15154 Striga asiatica HOM05D012724 ORTHO05D010595 1.8e-07 59.7 75 45.3
TWI53G1032 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.8e-07 59.7 98 39.8
Ca_22782_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000039 2.3e-07 59.3 84 38.1
TWI53G1885 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 2.3e-07 59.3 52 57.7
Aqoxy1G02132 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 3.0e-07 58.9 77 42.9
Medtr7g017040 Medicago truncatula HOM05D000007 ORTHO05D000039 3.0e-07 58.9 86 37.2
Dinv01172 Davidia involucrata HOM05D000007 ORTHO05D000039 3.9e-07 58.5 79 44.3
Dinv01173 Davidia involucrata HOM05D000007 ORTHO05D000039 3.9e-07 58.5 79 44.3
MD16G1218300 Malus domestica HOM05D000007 ORTHO05D000017 3.9e-07 58.5 76 40.8
Medtr3g011120 Medicago truncatula HOM05D000007 ORTHO05D000039 3.9e-07 58.5 86 38.4
TWI31G1434 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 3.9e-07 58.5 75 41.3
Thecc.10G169100 Theobroma cacao HOM05D000007 ORTHO05D000039 5.1e-07 58.2 84 40.5
CANSAT56G1116 Cannabis sativa HOM05D000007 ORTHO05D000017 6.7e-07 57.8 93 35.5
Ca_14677_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000039 6.7e-07 57.8 100 34.0
Rhsim03G0265900 Rhododendron simsii HOM05D000007 ORTHO05D000039 6.7e-07 57.8 77 42.9
SGA_v2.0_scaffold16G07511 Striga asiatica HOM05D000007 ORTHO05D000039 6.7e-07 57.8 84 40.5
SGA_v2.0_scaffold90G27929 Striga asiatica HOM05D012724 ORTHO05D010595 6.7e-07 57.8 78 46.2
Thecc.10G168100 Theobroma cacao HOM05D000007 ORTHO05D000039 6.7e-07 57.8 92 38.0
Thecc.10G168500 Theobroma cacao HOM05D000007 ORTHO05D000039 6.7e-07 57.8 85 38.8
TWI31G0323 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 6.7e-07 57.8 72 43.1
Medtr2g034700 Medicago truncatula HOM05D000007 ORTHO05D000039 8.7e-07 57.4 77 35.1
PSO339G1771 Papaver somniferum HOM05D000007 ORTHO05D000017 8.7e-07 57.4 104 36.5
Cfa000443 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.1e-06 57.0 95 38.9
COL.COLO4_31897 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.1e-06 57.0 87 36.8
Haze_06418 Corylus avellana HOM05D003185 ORTHO05D009915 1.1e-06 57.0 109 34.9
Medtr0129s0070 Medicago truncatula HOM05D000007 ORTHO05D000039 1.1e-06 57.0 88 36.4
Medtr1g007410 Medicago truncatula HOM05D000007 ORTHO05D000039 1.1e-06 57.0 92 37.0
Oeu025157.1 Olea europaea HOM05D000007 ORTHO05D000039 1.1e-06 57.0 80 38.8
QL03p021893 Quercus lobata HOM05D000007 ORTHO05D000039 1.1e-06 57.0 83 38.6
AL7G42560 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 1.5e-06 56.6 74 41.9
Ca_22994_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000039 1.5e-06 56.6 76 40.8
Ca_31000_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000039 1.5e-06 56.6 76 40.8
Dinv04466 Davidia involucrata HOM05D000007 ORTHO05D000039 1.5e-06 56.6 78 41.0
Lj5g0012753 Lotus japonicus HOM05D000007 ORTHO05D000039 1.5e-06 56.6 92 35.9
Medtr5g074800 Medicago truncatula HOM05D000007 ORTHO05D000039 1.5e-06 56.6 80 42.5
SGA_v2.0_scaffold90G27930 Striga asiatica HOM05D012724 ORTHO05D010595 1.5e-06 56.6 80 42.5
Aqoxy5G04154 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 1.9e-06 56.2 78 37.2
Aqoxy5G04164 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 1.9e-06 56.2 78 37.2
Lj2g0020345 Lotus japonicus HOM05D000007 ORTHO05D000039 1.9e-06 56.2 92 34.8
Medtr1g098180 Medicago truncatula HOM05D000007 ORTHO05D000039 1.9e-06 56.2 73 38.4
Medtr5g072060 Medicago truncatula HOM05D000261 ORTHO05D000039 1.9e-06 56.2 58 48.3
Medtr8g064890 Medicago truncatula HOM05D000007 ORTHO05D000039 1.9e-06 56.2 89 33.7
QL03p020720 Quercus lobata HOM05D000007 ORTHO05D000039 1.9e-06 56.2 83 38.6
QL03p021906 Quercus lobata HOM05D000007 ORTHO05D000039 1.9e-06 56.2 83 38.6
QL11p009377 Quercus lobata HOM05D000007 ORTHO05D000017 1.9e-06 56.2 80 41.2
TWI79G0415 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.9e-06 56.2 88 40.9
Cfa000449 Carpinus fangiana HOM05D000007 ORTHO05D000039 2.5e-06 55.8 95 37.9
Lsat_1_v5_gn_5_101640 Lactuca sativa HOM05D000007 ORTHO05D000017 2.5e-06 55.8 83 33.7
Medtr7g016930 Medicago truncatula HOM05D000007 ORTHO05D000039 2.5e-06 55.8 84 36.9
SGA_v2.0_scaffold16G07510 Striga asiatica HOM05D000007 ORTHO05D000039 2.5e-06 55.8 84 40.5
Aqoxy1G02131 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 3.3e-06 55.5 78 43.6
Cfa000425 Carpinus fangiana HOM05D000007 ORTHO05D000039 3.3e-06 55.5 96 34.4
COL.COLO4_06115 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.3e-06 55.5 81 39.5
Haze_04104 Corylus avellana HOM05D000007 ORTHO05D000039 3.3e-06 55.5 87 40.2
Medtr2g104340 Medicago truncatula HOM05D000007 ORTHO05D000039 3.3e-06 55.5 78 39.7
Phvul.003G084100 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 3.3e-06 55.5 78 35.9
SGA_v2.0_scaffold7G03843 Striga asiatica HOM05D012724 ORTHO05D010595 3.3e-06 55.5 53 56.6
CAN.G567.54 Capsicum annuum HOM05D000007 ORTHO05D000017 4.3e-06 55.1 84 38.1
Cfa000451 Carpinus fangiana HOM05D000007 ORTHO05D000039 4.3e-06 55.1 95 38.9
Medtr2g021950 Medicago truncatula HOM05D000007 ORTHO05D000039 4.3e-06 55.1 89 36.0
Peaxi162Scf03085g00002 Petunia axillaris HOM05D000007 ORTHO05D000039 4.3e-06 55.1 114 36.0
Psat0s7655g0040 Pisum sativum HOM05D000007 ORTHO05D000039 4.3e-06 55.1 84 35.7
Psat2g183600 Pisum sativum HOM05D000007 ORTHO05D000039 4.3e-06 55.1 84 35.7
QL03p020743 Quercus lobata HOM05D000007 ORTHO05D000039 4.3e-06 55.1 84 39.3
QL03p020817 Quercus lobata HOM05D000007 ORTHO05D000039 4.3e-06 55.1 84 39.3
SGA_v2.0_scaffold1G00255 Striga asiatica HOM05D011185 ORTHO05D010595 4.3e-06 55.1 92 42.4
Actinidia29351 Actinidia chinensis HOM05D000007 ORTHO05D000039 5.6e-06 54.7 79 40.5
COL.COLO4_11671 Corchorus olitorius HOM05D000007 ORTHO05D000039 5.6e-06 54.7 86 39.5
Dinv11914 Davidia involucrata HOM05D000007 ORTHO05D000017 5.6e-06 54.7 103 31.1
Gohir.D10G241600 Gossypium hirsutum HOM05D000007 ORTHO05D000039 5.6e-06 54.7 103 35.9
Medtr1g050312 Medicago truncatula HOM05D000007 ORTHO05D000039 5.6e-06 54.7 83 34.9
VMungo1215G0255 Vigna mungo HOM05D000007 ORTHO05D000017 5.6e-06 54.7 78 35.9
Cfa000455 Carpinus fangiana HOM05D000007 ORTHO05D000039 7.4e-06 54.3 95 37.9
Cfa000463 Carpinus fangiana HOM05D000007 ORTHO05D000039 7.4e-06 54.3 96 37.5
Ca_19548_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000039 7.4e-06 54.3 86 32.6
Ca_29970_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000039 7.4e-06 54.3 86 32.6
Medtr2g066200 Medicago truncatula HOM05D000007 ORTHO05D000039 7.4e-06 54.3 78 34.6
Atru.chr1.2424 Acer truncatum HOM05D000007 ORTHO05D000017 9.6e-06 53.9 90 36.7
Atru.chr1.2426 Acer truncatum HOM05D000007 ORTHO05D000017 9.6e-06 53.9 90 36.7
arahy.Tifrunner.gnm1.ann1.F72QI3 Arachis hypogaea HOM05D000422 ORTHO05D000039 9.6e-06 53.9 77 35.1
arahy.Tifrunner.gnm1.ann1.R068JS Arachis hypogaea HOM05D000007 ORTHO05D000039 9.6e-06 53.9 77 35.1
Cfa000428 Carpinus fangiana HOM05D000007 ORTHO05D000039 9.6e-06 53.9 90 35.6
Cfa000450 Carpinus fangiana HOM05D000007 ORTHO05D000039 9.6e-06 53.9 96 38.5
COL.COLO4_22628 Corchorus olitorius HOM05D000007 ORTHO05D000039 9.6e-06 53.9 81 43.2
Haze_04106 Corylus avellana HOM05D000007 ORTHO05D000039 9.6e-06 53.9 87 39.1
Dinv24586 Davidia involucrata HOM05D000007 ORTHO05D000039 9.6e-06 53.9 74 47.3
Dinv34982 Davidia involucrata HOM05D000007 ORTHO05D000039 9.6e-06 53.9 103 36.9
FvH4_6g06760 Fragaria vesca HOM05D000007 ORTHO05D000039 9.6e-06 53.9 78 38.5
Nitab4.5_0000271g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 9.6e-06 53.9 95 33.7


User provided reference genes

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