Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 1.7e-100 369.4 197 100.0
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 7.5e-88 327.4 198 90.4
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 7.1e-70 267.7 196 73.0
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 5.8e-64 248.1 196 69.4
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 2.2e-63 246.1 196 68.9
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 1.9e-62 243.0 196 68.4
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 4.2e-62 241.9 190 68.9
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 9.3e-62 240.7 196 67.3
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 3.5e-61 238.8 196 65.8
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 4.6e-61 238.4 196 66.8
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 7.8e-61 237.7 196 63.8
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 1.7e-60 236.5 196 66.8
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 2.3e-60 236.1 196 65.8
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 6.6e-60 234.6 196 65.8
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 8.7e-60 234.2 196 67.3
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 1.5e-59 233.4 196 67.3
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.9e-59 233.0 196 64.3
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 2.5e-59 232.6 204 64.7
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 4.3e-59 231.9 195 64.1
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 5.6e-59 231.5 196 64.3
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 5.6e-59 231.5 196 64.8
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 7.3e-59 231.1 199 64.3
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 7.3e-59 231.1 203 64.0
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 1.3e-58 230.3 198 65.2
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 1.6e-58 229.9 196 64.3
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 1.6e-58 229.9 196 63.8
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.6e-58 229.9 203 64.0
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 2.8e-58 229.2 198 63.6
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 3.6e-58 228.8 200 62.5
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 4.8e-58 228.4 198 64.6
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 6.2e-58 228.0 196 64.8
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 6.2e-58 228.0 197 63.5
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 8.1e-58 227.6 196 63.8
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 8.1e-58 227.6 196 63.8
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 8.1e-58 227.6 196 63.8
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.1e-57 227.3 195 61.5
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 1.4e-57 226.9 202 61.9
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 1.4e-57 226.9 202 61.9
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 1.4e-57 226.9 201 62.7
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 1.4e-57 226.9 195 65.1
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 1.8e-57 226.5 197 64.0
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 1.8e-57 226.5 196 63.8
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 3.1e-57 225.7 202 61.9
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 4.0e-57 225.3 198 64.1
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 5.3e-57 224.9 196 67.9
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 5.3e-57 224.9 196 63.3
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 6.9e-57 224.6 185 64.3
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 6.9e-57 224.6 196 62.8
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 6.9e-57 224.6 197 62.9
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 9.0e-57 224.2 201 62.2
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 1.2e-56 223.8 205 61.5
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 1.2e-56 223.8 205 61.5
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 1.2e-56 223.8 196 63.3
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.2e-56 223.8 196 62.8
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 1.2e-56 223.8 198 63.6
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 1.2e-56 223.8 198 63.6
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.0e-56 223.0 197 62.4
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 2.0e-56 223.0 196 63.3
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.6e-56 222.6 190 63.7
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.6e-56 222.6 197 61.9
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 2.6e-56 222.6 197 61.9
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 2.6e-56 222.6 198 61.1
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 2.6e-56 222.6 233 57.5
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.4e-56 222.2 196 62.2
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 4.5e-56 221.9 196 63.8
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 4.5e-56 221.9 202 61.9
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 5.8e-56 221.5 197 61.4
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 7.6e-56 221.1 197 62.4
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 1.3e-55 220.3 197 61.9
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 4.9e-55 218.4 202 63.4
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 4.9e-55 218.4 196 61.2
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 6.4e-55 218.0 201 61.2
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 8.4e-55 217.6 181 63.5
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 1.1e-54 217.2 194 61.3
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 1.1e-54 217.2 200 64.0
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 4.2e-54 215.3 188 62.2
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 5.4e-54 214.9 197 62.4
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 5.4e-54 214.9 196 61.2
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 9.3e-54 214.2 196 61.7
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 1.2e-53 213.8 197 59.9
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 1.2e-53 213.8 197 60.9
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 2.1e-53 213.0 196 59.7
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 4.6e-53 211.8 196 60.2
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 6.0e-53 211.5 195 59.5
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 1.0e-52 210.7 193 59.1
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 1.3e-52 210.3 196 58.2
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 5.1e-52 208.4 196 60.7
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 5.1e-52 208.4 182 60.4
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 5.1e-52 208.4 198 59.1
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 8.7e-52 207.6 195 61.0
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 8.7e-52 207.6 197 60.4
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.5e-51 206.8 213 57.7
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 7.4e-51 204.5 192 61.5
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 1.3e-50 203.8 159 66.0
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 1.3e-50 203.8 188 58.0
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 2.8e-50 202.6 187 57.8
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 9.0e-49 197.6 196 58.2
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.0e-48 196.4 148 67.6
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.0e-48 196.4 148 67.6
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 4.5e-48 195.3 193 59.1
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 4.2e-46 188.7 178 58.4
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 1.2e-45 187.2 157 61.1
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 1.6e-45 186.8 118 83.1
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 6.7e-44 181.4 149 59.7
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 2.5e-43 179.5 140 67.9
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 1.1e-41 174.1 359 36.8
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 1.8e-41 173.3 150 62.0
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 1.2e-37 160.6 172 54.1
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.3e-36 157.1 121 65.3
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 1.5e-35 153.7 121 64.5
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 1.5e-35 153.7 150 52.7
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 4.1e-33 145.6 124 66.9
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 1.2e-32 144.1 161 50.3
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 2.1e-29 133.3 116 64.7
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 6.1e-29 131.7 153 51.6
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 7.9e-29 131.3 120 56.7
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 3.9e-28 129.0 176 43.8
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 4.5e-24 115.5 121 52.9
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 1.4e-22 110.5 178 39.3
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 1.9e-22 110.2 75 76.0
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 4.2e-22 109.0 97 56.7
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 5.1e-20 102.1 136 44.9
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.2e-16 90.9 118 49.2
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.5e-16 90.5 77 67.5
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 5.5e-14 82.0 76 63.2
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 4.7e-13 79.0 182 31.3
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 1.4e-12 77.4 83 50.6
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 1.4e-12 77.4 48 81.2
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 2.0e-11 73.6 57 66.7
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 2.0e-11 73.6 77 57.1
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 8.2e-10 68.2 46 76.1


User provided reference genes

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