Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 2.8e-53 212.2 158 100.0
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 1.1e-41 173.7 153 92.2
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 5.8e-22 108.2 115 77.4
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 1.3e-21 107.1 131 69.5
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 2.4e-20 102.8 111 73.9
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 7.0e-20 101.3 115 70.4
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 1.6e-19 100.1 115 73.0
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 1.6e-19 100.1 114 71.9
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 7.8e-19 97.8 124 66.9
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 8.6e-18 94.4 117 69.2
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 4.3e-17 92.0 116 72.4
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 1.2e-16 90.5 106 77.4
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 1.6e-16 90.1 112 70.5
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 4.7e-16 88.6 62 54.8
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 8.1e-16 87.8 124 66.1
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 8.1e-16 87.8 116 71.6
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 3.1e-15 85.9 62 54.8
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 6.8e-15 84.7 63 55.6
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 1.2e-14 84.0 116 69.0
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 1.2e-14 84.0 148 58.8
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 1.2e-14 84.0 148 58.8
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 1.5e-14 83.6 116 69.0
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 2.6e-14 82.8 62 59.7
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 4.4e-14 82.0 108 69.4
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 1.7e-13 80.1 123 65.0
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 1.7e-13 80.1 114 67.5
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 1.7e-13 80.1 111 70.3
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 2.9e-13 79.3 62 53.2
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 4.9e-13 78.6 54 63.0
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 4.9e-13 78.6 116 67.2
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 4.9e-13 78.6 67 52.2
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 4.9e-13 78.6 110 69.1
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 6.4e-13 78.2 115 66.1
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 6.4e-13 78.2 63 50.8
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 1.9e-12 76.6 117 59.0
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 2.4e-12 76.3 116 67.2
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 4.1e-12 75.5 49 65.3
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 7.1e-12 74.7 51 60.8
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 1.6e-11 73.6 107 72.9
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 2.7e-11 72.8 61 52.5
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 1.0e-10 70.9 116 63.8
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 1.3e-10 70.5 110 67.3
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 1.3e-10 70.5 63 54.0
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 3.9e-10 68.9 64 48.4
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 3.9e-10 68.9 53 52.8
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 3.9e-10 68.9 119 55.5
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 3.3e-09 65.9 54 55.6
Manes.15G067600 Manihot esculenta HOM05D008051 ORTHO05D009905 4.3e-09 65.5 48 50.0
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 4.3e-09 65.5 47 55.3
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 7.3e-09 64.7 70 47.1
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 1.2e-08 63.9 104 69.2
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 1.6e-08 63.5 52 55.8
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 4.7e-08 62.0 49 57.1
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 4.7e-08 62.0 49 57.1
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 4.7e-08 62.0 49 57.1
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 1.4e-07 60.5 56 48.2
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 4.0e-07 58.9 44 54.5
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 5.2e-07 58.5 47 57.4
Thhalv10012178m.g Eutrema salsugineum HOM05D012777 ORTHO05D009905 1.2e-06 57.4 68 42.6
Carub.0001s3969 Capsella rubella HOM05D012777 ORTHO05D009905 3.4e-06 55.8 67 40.3
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 4.4e-06 55.5 48 54.2
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 4.4e-06 55.5 47 51.1
AL1G58320 Arabidopsis lyrata HOM05D012777 ORTHO05D009905 5.8e-06 55.1 69 40.6


User provided reference genes

Program Settings