Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 3.7e-279 964.1 460 100.0
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 9.8e-38 162.2 247 40.9
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 9.8e-38 162.2 247 40.9
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 8.3e-37 159.1 251 41.8
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.1e-36 158.7 239 39.7
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.1e-36 158.7 383 31.1
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.8e-36 157.9 176 51.1
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.4e-36 157.5 175 49.7
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 2.4e-36 157.5 242 40.1
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 2.4e-36 157.5 365 32.3
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 3.1e-36 157.1 283 36.0
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 5.4e-36 156.4 251 38.6
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 7.0e-36 156.0 243 40.7
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.0e-35 154.5 176 48.3
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 4.5e-35 153.3 223 43.5
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.9e-35 152.9 242 39.3
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 7.8e-35 152.5 242 40.1
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.0e-34 152.1 258 39.1
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.0e-34 152.1 273 37.4
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 1.3e-34 151.8 254 39.0
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.3e-34 151.8 269 37.2
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.7e-34 151.4 239 39.3
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.7e-34 151.4 258 36.0
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.3e-34 151.0 229 40.2
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.3e-34 151.0 243 40.3
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 2.9e-34 150.6 346 33.2
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.8e-34 150.2 195 44.6
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 5.0e-34 149.8 223 40.4
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 5.0e-34 149.8 244 38.5
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 6.6e-34 149.4 242 39.3
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 8.6e-34 149.1 242 38.8
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 8.6e-34 149.1 243 39.5
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 8.6e-34 149.1 168 48.2
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 8.6e-34 149.1 169 47.3
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.1e-33 148.7 166 47.0
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.5e-33 148.3 241 40.2
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.5e-33 147.5 241 39.8
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 3.3e-33 147.1 231 36.8
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.3e-33 147.1 169 47.9
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.3e-33 147.1 169 49.1
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.3e-33 147.1 169 49.1
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 3.3e-33 147.1 168 48.2
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 4.3e-33 146.7 234 39.7
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 5.6e-33 146.4 240 37.9
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.6e-33 146.4 273 36.3
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 7.3e-33 146.0 238 38.2
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 9.5e-33 145.6 170 50.0
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.2e-32 145.2 359 30.9
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.2e-32 145.2 239 39.7
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.2e-32 145.2 171 48.5
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.6e-32 144.8 162 48.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.6e-32 144.8 168 46.4
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.6e-32 144.8 303 33.3
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.1e-32 144.4 276 36.6
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.1e-32 144.4 169 46.7
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.1e-32 144.4 169 46.7
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.8e-32 144.1 273 35.9
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.8e-32 144.1 303 33.7
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 2.8e-32 144.1 166 48.2
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 3.6e-32 143.7 194 43.8
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 3.6e-32 143.7 169 48.5
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 4.7e-32 143.3 166 48.2
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 6.1e-32 142.9 178 44.4
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 6.1e-32 142.9 164 48.8
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 8.0e-32 142.5 216 38.4
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 8.0e-32 142.5 168 47.6
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.0e-31 142.1 193 43.0
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.0e-31 142.1 223 39.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.8e-31 141.4 168 48.2
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.8e-31 141.4 165 47.3
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.3e-31 141.0 166 48.2
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.3e-31 141.0 166 48.2
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.3e-31 141.0 202 42.1
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.0e-31 140.6 162 45.1
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 3.0e-31 140.6 167 48.5
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 3.0e-31 140.6 282 36.5
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 3.0e-31 140.6 229 41.9
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 4.0e-31 140.2 234 41.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 5.2e-31 139.8 243 39.5
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 5.2e-31 139.8 209 41.1
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 6.8e-31 139.4 281 35.6
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 8.9e-31 139.0 253 38.7
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.2e-30 138.7 170 48.2
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 2.0e-30 137.9 166 47.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.0e-30 137.9 217 37.3
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 2.0e-30 137.9 166 47.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.0e-30 137.9 258 33.3
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.0e-30 137.9 188 42.6
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 3.4e-30 137.1 162 45.7
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 3.4e-30 137.1 165 44.8
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.4e-30 136.7 249 39.0
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.4e-30 136.7 248 36.7
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 4.4e-30 136.7 168 45.2
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 5.8e-30 136.3 222 37.8
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 7.5e-30 136.0 176 43.2
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 7.5e-30 136.0 229 41.5
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 9.8e-30 135.6 270 37.0
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 9.8e-30 135.6 174 46.6
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 9.8e-30 135.6 167 46.7
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 1.7e-29 134.8 288 33.3
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.2e-29 134.4 246 35.0
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 2.9e-29 134.0 249 34.9
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 3.7e-29 133.7 167 46.7
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.9e-29 133.3 246 34.6
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.9e-29 133.3 162 42.6
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.9e-29 133.3 162 42.6
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 6.4e-29 132.9 251 34.7
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 8.3e-29 132.5 265 34.7
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.4e-28 131.7 164 44.5
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.4e-28 131.7 170 44.1
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.4e-28 131.7 220 38.6
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.4e-28 131.0 204 41.7
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 4.1e-28 130.2 164 41.5
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 5.4e-28 129.8 193 37.8
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 7.0e-28 129.4 170 43.5
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 9.2e-28 129.0 172 44.8
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 9.2e-28 129.0 174 46.0
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.2e-27 128.6 169 43.2
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.0e-27 127.9 256 35.5
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 7.8e-27 125.9 191 42.9
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.0e-26 125.6 342 29.8
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.7e-26 124.8 163 42.3
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.7e-26 124.8 127 50.4
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 5.0e-26 123.2 209 39.2
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.1e-25 122.1 231 35.9
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 3.3e-25 120.6 167 43.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 4.3e-25 120.2 173 46.8
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 5.6e-25 119.8 176 39.8
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 9.5e-25 119.0 170 41.8
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 4.7e-24 116.7 176 39.2
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.8e-23 114.8 237 33.3
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 4.0e-23 113.6 166 40.4
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 5.2e-23 113.2 227 33.9
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 6.8e-23 112.8 248 31.5
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.5e-22 111.7 218 33.5
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.0e-22 111.3 268 33.6
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.0e-22 111.3 267 32.6
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.6e-22 110.9 203 36.9
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 5.8e-22 109.8 231 36.8
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-21 108.6 149 45.6
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.9e-21 107.5 224 33.0
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.9e-21 107.5 224 33.0
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 4.9e-21 106.7 175 40.0
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 8.3e-21 105.9 175 39.4
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.9e-20 104.8 128 44.5
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 3.2e-20 104.0 128 46.9
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 9.2e-20 102.4 242 32.6
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 2.0e-19 101.3 369 26.3
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.5e-19 100.5 155 40.0
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.7e-18 98.2 159 38.4
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.7e-18 98.2 231 32.9
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.3e-18 97.8 169 34.9
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.3e-18 97.8 228 31.6
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 3.3e-17 94.0 166 34.9
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 1.2e-16 92.0 227 32.2
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.8e-16 90.9 172 36.0
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 2.3e-15 87.8 194 30.9
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.8e-15 86.3 165 37.6
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 9.9e-14 82.4 84 52.4
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.7e-13 81.6 176 33.5
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.2e-13 81.3 161 39.8
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.4e-12 78.6 85 48.2
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.4e-12 77.8 159 33.3
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 7.1e-12 76.3 79 49.4
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.7e-11 74.3 80 50.0
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.6e-11 73.6 130 35.4
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.0e-10 72.4 81 46.9
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 5.1e-10 70.1 106 41.5
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.9e-09 68.2 51 60.8
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.6e-09 66.6 81 46.9
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 6.8e-07 59.7 51 54.9


User provided reference genes

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