Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 1.9e-89 332.4 163 100.0
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.8e-71 272.7 164 83.5
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 3.8e-61 238.4 164 75.0
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 2.1e-59 232.6 164 72.0
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 7.4e-57 224.2 168 67.3
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 4.7e-51 204.9 163 63.8
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 6.1e-51 204.5 202 56.9
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 3.6e-43 178.7 165 56.4
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.0e-42 177.2 164 55.5
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 4.0e-42 175.3 165 56.4
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 7.5e-41 171.0 163 54.6
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 9.7e-41 170.6 163 52.8
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.3e-40 170.2 163 52.8
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 8.3e-40 167.5 163 52.1
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.4e-39 166.0 163 51.5
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.1e-39 165.6 163 52.8
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 3.1e-39 165.6 163 51.5
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 7.0e-39 164.5 164 53.0
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 9.1e-39 164.1 163 51.5
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.6e-38 163.3 163 50.9
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 2.0e-38 162.9 165 53.9
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.7e-38 162.5 165 51.5
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 3.8e-37 158.7 164 52.4
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.5e-36 156.8 165 50.3
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.5e-36 156.8 165 50.3
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.5e-36 156.8 169 50.3
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.9e-36 156.4 165 49.1
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 1.9e-36 156.4 164 51.8
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.9e-36 156.4 164 50.0
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 2.5e-36 156.0 165 51.5
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 2.5e-36 156.0 148 55.4
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 5.5e-36 154.8 165 49.7
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 7.2e-36 154.5 163 50.3
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 9.4e-36 154.1 163 50.9
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 9.4e-36 154.1 164 51.2
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 1.2e-35 153.7 164 51.2
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 1.2e-35 153.7 170 47.6
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 1.2e-35 153.7 164 48.8
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.6e-35 153.3 159 49.1
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.7e-35 152.5 163 48.5
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 4.7e-35 151.8 157 52.9
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 6.1e-35 151.4 166 50.0
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.4e-34 150.2 164 50.6
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.8e-34 149.8 163 50.3
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 4.0e-34 148.7 160 47.5
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 5.2e-34 148.3 163 47.9
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 8.8e-34 147.5 159 46.5
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 8.8e-34 147.5 168 48.8
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 1.2e-33 147.1 164 50.6
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.5e-33 146.7 163 49.7
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.0e-33 146.4 159 45.9
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 3.4e-33 145.6 159 45.9
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 4.4e-33 145.2 164 47.6
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 9.8e-33 144.1 171 44.4
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.7e-32 143.3 165 47.9
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.7e-32 143.3 169 49.7
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 1.7e-32 143.3 165 51.5
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 2.2e-32 142.9 166 50.0
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 3.7e-32 142.1 165 48.5
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.7e-32 142.1 163 50.3
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.4e-31 140.2 167 45.5
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 1.4e-31 140.2 173 47.4
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.8e-31 139.8 163 47.9
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 3.1e-31 139.0 163 46.6
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 4.1e-31 138.7 159 45.9
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 5.4e-31 138.3 163 47.9
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 7.0e-31 137.9 164 44.5
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.6e-30 136.7 154 48.7
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 2.7e-30 136.0 159 44.7
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 2.7e-30 136.0 159 44.7
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.5e-30 135.6 163 47.9
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 4.5e-30 135.2 159 44.0
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 4.5e-30 135.2 159 44.0
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 4.5e-30 135.2 163 47.9
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 7.7e-30 134.4 159 44.0
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 7.7e-30 134.4 162 45.7
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 7.7e-30 134.4 168 48.2
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.7e-29 133.3 163 47.9
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 2.3e-29 132.9 162 46.9
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.3e-29 132.9 163 46.6
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 2.9e-29 132.5 164 46.3
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 2.9e-29 132.5 168 46.4
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 3.8e-29 132.1 163 46.0
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 3.8e-29 132.1 200 39.5
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 8.6e-29 131.0 164 45.7
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 1.1e-28 130.6 159 43.4
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 2.5e-28 129.4 163 46.0
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 4.2e-28 128.6 162 45.1
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 5.5e-28 128.3 159 42.8
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 5.5e-28 128.3 167 43.1
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 1.6e-27 126.7 244 34.0
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.1e-27 126.3 163 44.2
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.8e-27 125.9 160 43.8
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 3.6e-27 125.6 139 52.5
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 6.1e-27 124.8 161 42.2
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 6.1e-27 124.8 164 42.7
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.0e-26 124.0 173 41.6
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.0e-26 124.0 223 36.8
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.0e-26 124.0 163 41.7
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.0e-26 124.0 163 41.7
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 2.3e-26 122.9 155 43.2
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 5.2e-26 121.7 158 42.4
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 6.8e-26 121.3 192 38.0
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.2e-25 120.6 163 42.3
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.5e-25 120.2 193 37.8
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 3.4e-25 119.0 161 45.3
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 1.3e-24 117.1 166 42.8
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 2.2e-24 116.3 164 41.5
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 2.2e-24 116.3 157 38.9
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 6.3e-24 114.8 167 42.5
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 6.3e-24 114.8 169 41.4
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 4.1e-23 112.1 163 39.9
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 5.9e-22 108.2 156 43.6
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.3e-21 107.1 81 61.7
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.9e-21 105.9 161 38.5
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.9e-21 105.9 181 36.5
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 3.9e-21 105.5 268 31.0
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 8.6e-21 104.4 106 49.1
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 8.6e-21 104.4 161 43.5
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.1e-20 104.0 159 42.8
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.1e-20 104.0 79 58.2
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 1.5e-20 103.6 161 41.0
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 2.5e-20 102.8 225 32.9
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 4.3e-20 102.1 159 42.1
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 4.3e-20 102.1 159 42.1
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 4.3e-20 102.1 160 39.4
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 5.6e-20 101.7 162 40.7
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 7.3e-20 101.3 162 40.1
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 7.3e-20 101.3 81 56.8
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 1.2e-19 100.5 161 39.8
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.6e-19 100.1 162 41.4
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.6e-19 100.1 162 41.4
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.6e-19 100.1 154 41.6
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 2.1e-19 99.8 149 39.6
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.8e-19 99.4 157 41.4
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 4.7e-19 98.6 155 42.6
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 6.1e-19 98.2 163 36.8
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.4e-18 97.1 159 39.6
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 3.1e-18 95.9 159 39.0
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 5.2e-18 95.1 103 50.5
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 2.0e-17 93.2 170 36.5
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 4.4e-17 92.0 161 36.6
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 3.7e-16 89.0 109 45.9
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 4.6e-14 82.0 161 37.9
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 1.3e-13 80.5 73 56.2
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 8.6e-13 77.8 80 50.0
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.2e-11 73.9 95 45.3
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.6e-11 73.6 77 41.6
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 6.2e-11 71.6 81 42.0
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 4.0e-10 68.9 154 33.8
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 6.8e-10 68.2 44 68.2
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.2e-09 67.4 151 32.5
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.4e-09 65.5 81 46.9
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 1.3e-08 63.9 100 36.0
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 4.6e-06 55.5 88 42.0


User provided reference genes

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