Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 9.0e-136 486.9 238 100.0
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 2.3e-51 206.5 200 55.5
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 4.0e-51 205.7 193 60.6
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 3.2e-48 196.1 200 55.0
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 1.2e-47 194.1 207 56.0
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.6e-47 193.7 198 58.1
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 7.8e-47 191.4 205 55.6
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 2.5e-45 186.4 197 54.3
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 3.3e-45 186.0 197 53.3
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 3.3e-45 186.0 196 55.6
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 5.6e-45 185.3 198 55.1
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 5.6e-45 185.3 198 55.1
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.6e-44 183.7 196 55.1
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.6e-44 183.7 194 55.2
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 2.1e-44 183.3 198 55.6
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 3.6e-44 182.6 198 54.0
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 1.4e-43 180.6 198 53.5
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 8.9e-43 177.9 199 51.3
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.5e-42 177.2 195 53.3
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 5.8e-42 175.3 196 50.5
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 5.8e-42 175.3 193 52.8
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 1.3e-41 174.1 197 51.3
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.3e-41 174.1 198 54.5
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.9e-41 172.9 195 53.3
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 3.7e-41 172.6 198 53.5
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 8.3e-41 171.4 177 54.8
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 8.3e-41 171.4 172 59.9
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 1.4e-40 170.6 197 51.8
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.9e-40 170.2 198 53.5
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 2.4e-40 169.9 205 49.3
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 2.4e-40 169.9 199 51.8
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.4e-40 169.9 194 53.1
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 3.2e-40 169.5 195 52.3
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 5.4e-40 168.7 198 51.5
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 5.4e-40 168.7 194 50.5
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 9.2e-40 167.9 194 52.6
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 9.2e-40 167.9 194 52.1
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 9.2e-40 167.9 196 54.1
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.2e-39 167.5 195 51.3
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 1.2e-39 167.5 197 51.3
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.6e-39 167.2 195 50.8
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 2.1e-39 166.8 193 50.8
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 2.7e-39 166.4 194 52.1
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.5e-39 166.0 195 50.8
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 3.5e-39 166.0 218 47.2
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 3.5e-39 166.0 196 52.0
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 4.6e-39 165.6 196 51.0
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 6.0e-39 165.2 193 50.3
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 7.8e-39 164.9 194 52.1
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 1.3e-38 164.1 197 50.3
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 3.0e-38 162.9 195 51.3
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 5.1e-38 162.2 200 52.0
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 6.6e-38 161.8 193 51.3
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 6.6e-38 161.8 194 52.1
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.1e-37 161.0 196 50.5
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 1.5e-37 160.6 195 50.3
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 2.5e-37 159.8 194 49.5
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 2.5e-37 159.8 194 50.5
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 3.3e-37 159.5 195 50.3
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 4.3e-37 159.1 197 49.2
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.3e-37 159.1 195 50.3
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.3e-37 159.1 195 50.8
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 5.6e-37 158.7 195 50.8
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 7.3e-37 158.3 194 50.0
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.2e-36 157.5 196 48.5
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 1.8e-35 153.7 174 52.9
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 2.4e-35 153.3 195 50.3
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 2.4e-35 153.3 203 47.3
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 4.0e-35 152.5 196 49.0
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.0e-35 152.5 194 49.0
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 8.9e-35 151.4 187 50.3
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 1.2e-34 151.0 174 51.7
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 1.2e-34 151.0 195 48.2
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 1.5e-34 150.6 194 47.9
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.4e-34 149.4 200 47.0
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 3.4e-34 149.4 198 49.5
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 5.8e-34 148.7 193 47.2
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 7.6e-34 148.3 196 48.5
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 9.9e-34 147.9 190 48.4
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 9.9e-34 147.9 194 46.9
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 1.7e-33 147.1 170 51.2
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.9e-33 146.4 193 48.7
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 2.9e-33 146.4 194 47.4
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 3.8e-33 146.0 174 52.3
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 6.4e-33 145.2 197 47.7
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 6.4e-33 145.2 173 53.2
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 2.4e-32 143.3 174 48.9
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 3.2e-32 142.9 168 49.4
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 5.4e-32 142.1 192 44.8
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 1.2e-31 141.0 179 50.8
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 1.2e-31 141.0 174 50.0
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.2e-31 141.0 191 44.0
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 1.6e-31 140.6 189 48.7
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.6e-31 140.6 172 50.0
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.1e-31 140.2 193 43.0
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.6e-31 139.0 174 50.0
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 4.6e-31 139.0 174 50.6
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 6.0e-31 138.7 187 48.1
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.3e-30 137.5 194 42.3
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 3.0e-30 136.3 195 44.6
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.0e-30 136.3 173 48.0
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 3.9e-30 136.0 178 46.1
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 5.1e-30 135.6 179 48.6
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 5.1e-30 135.6 196 46.4
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 8.7e-30 134.8 173 48.6
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 1.1e-29 134.4 171 48.0
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.1e-29 134.4 196 45.4
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.5e-29 134.0 195 43.1
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 1.9e-29 133.7 175 48.0
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 1.9e-29 133.7 195 46.2
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 2.5e-29 133.3 199 43.7
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 4.3e-29 132.5 170 45.9
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.2e-28 131.0 195 42.6
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 1.6e-28 130.6 201 43.8
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 2.1e-28 130.2 199 44.2
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 2.8e-28 129.8 193 42.0
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 2.8e-28 129.8 192 43.2
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.6e-28 129.4 189 46.6
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 8.1e-28 128.3 170 46.5
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.8e-27 127.1 172 48.3
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 3.1e-27 126.3 196 43.9
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 4.0e-27 125.9 202 43.1
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 5.3e-27 125.6 169 49.1
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 1.2e-26 124.4 210 41.4
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 1.5e-26 124.0 212 41.0
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 7.6e-26 121.7 196 41.3
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 9.9e-26 121.3 197 41.6
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 2.2e-25 120.2 194 39.7
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 6.4e-25 118.6 193 40.9
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.1e-24 117.9 193 39.9
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 1.4e-24 117.5 192 41.7
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.9e-24 117.1 112 60.7
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 2.4e-24 116.7 191 42.4
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 3.2e-24 116.3 192 38.5
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 4.2e-24 115.9 181 43.1
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 4.2e-24 115.9 193 40.4
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 4.2e-24 115.9 193 40.4
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 5.4e-24 115.5 195 41.5
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 9.3e-24 114.8 172 43.6
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 3.5e-23 112.8 183 45.4
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 3.0e-22 109.8 197 38.1
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 3.0e-22 109.8 202 38.1
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 3.0e-22 109.8 155 47.7
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 1.5e-21 107.5 207 42.0
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 2.5e-21 106.7 193 38.3
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 1.3e-20 104.4 200 37.5
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 1.6e-20 104.0 192 39.1
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 3.6e-20 102.8 195 41.0
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 4.8e-20 102.4 195 36.9
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 1.4e-19 100.9 173 40.5
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 4.0e-19 99.4 220 33.6
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 9.0e-19 98.2 214 38.8
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 9.0e-19 98.2 171 39.2
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 2.6e-18 96.7 167 36.5
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 1.3e-17 94.4 214 38.3
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.3e-17 94.4 192 37.5
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 2.2e-17 93.6 170 40.0
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 3.8e-17 92.8 193 36.3
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 1.1e-16 91.3 193 36.3
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.4e-16 90.9 167 38.9
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 7.9e-15 85.1 174 35.1
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 5.6e-13 79.0 176 36.4
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 1.6e-12 77.4 209 34.4
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 4.8e-12 75.9 196 34.7
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 4.0e-11 72.8 215 32.6
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 9.0e-11 71.6 220 30.5
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 9.0e-11 71.6 166 34.9
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 2.0e-10 70.5 173 35.8
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 3.4e-10 69.7 201 32.8
Aqoxy5G02026 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 4.2e-08 62.8 200 29.5
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 1.6e-07 60.8 177 30.5
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.0e-06 58.2 148 31.8
CARHR045140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 5.1e-06 55.8 106 37.7


User provided reference genes

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