Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 1.6e-118 429.5 228 100.0
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 4.2e-98 361.7 211 91.9
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 1.9e-95 352.8 211 91.0
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 5.1e-88 328.2 221 81.9
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.9e-82 309.7 221 76.5
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 1.3e-80 303.5 222 77.0
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 9.7e-79 297.4 256 67.2
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 3.1e-77 292.4 221 72.9
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 5.3e-77 291.6 306 58.5
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 6.9e-77 291.2 222 71.6
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.2e-76 290.4 221 72.9
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 7.7e-76 287.7 221 71.0
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.0e-75 287.3 221 72.4
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 1.3e-75 287.0 225 71.1
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.7e-75 286.6 221 71.9
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 3.8e-75 285.4 221 69.7
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 8.5e-75 284.3 221 69.2
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.9e-74 283.1 221 70.1
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 4.2e-74 282.0 221 69.2
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 5.5e-74 281.6 221 73.8
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 7.2e-74 281.2 220 73.2
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.1e-73 279.6 222 70.7
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 2.1e-73 279.6 217 70.0
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.1e-73 279.6 221 70.1
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 3.6e-73 278.9 221 73.3
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 6.1e-73 278.1 221 69.2
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 6.1e-73 278.1 221 70.1
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 6.1e-73 278.1 221 69.7
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 6.1e-73 278.1 218 70.2
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 7.9e-73 277.7 221 70.1
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 1.0e-72 277.3 221 68.3
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.3e-72 276.2 219 68.9
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 3.0e-72 275.8 221 68.8
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 3.0e-72 275.8 219 69.4
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 5.1e-72 275.0 221 68.3
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 5.1e-72 275.0 221 71.0
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 6.7e-72 274.6 221 67.9
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 6.7e-72 274.6 219 68.5
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.0e-71 273.1 219 68.0
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 2.0e-71 273.1 221 67.4
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 2.5e-71 272.7 221 71.0
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.5e-71 272.7 221 67.9
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 2.5e-71 272.7 221 67.9
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.5e-71 272.7 219 68.0
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 7.4e-71 271.2 219 67.6
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 7.4e-71 271.2 220 67.3
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 9.7e-71 270.8 221 68.3
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.3e-70 270.4 221 66.5
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.7e-70 270.0 221 66.1
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 3.7e-70 268.9 221 67.9
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 3.7e-70 268.9 221 67.9
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 3.7e-70 268.9 221 67.9
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 4.8e-70 268.5 219 67.1
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 4.8e-70 268.5 221 66.1
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 8.2e-70 267.7 221 65.2
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 8.2e-70 267.7 219 67.6
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.1e-69 267.3 221 67.4
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 1.1e-69 267.3 219 66.7
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 1.4e-69 266.9 221 66.5
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 1.4e-69 266.9 221 67.4
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.4e-69 266.9 221 67.9
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 1.4e-69 266.9 219 67.6
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 1.8e-69 266.5 221 66.5
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 1.8e-69 266.5 221 66.5
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 3.1e-69 265.8 221 67.9
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 4.1e-69 265.4 219 67.1
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 4.1e-69 265.4 221 67.4
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.2e-68 263.8 220 66.8
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 5.9e-68 261.5 221 67.0
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 7.7e-68 261.2 239 61.5
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 5.0e-67 258.5 219 64.8
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 5.0e-67 258.5 219 68.5
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 5.0e-67 258.5 219 68.5
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 6.5e-67 258.1 183 79.2
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 8.5e-67 257.7 219 64.4
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 3.2e-66 255.8 222 65.3
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 3.2e-66 255.8 222 64.0
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 1.6e-65 253.4 250 59.6
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.6e-65 253.4 221 66.1
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 2.1e-65 253.1 221 64.7
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 2.1e-65 253.1 221 64.7
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 2.7e-65 252.7 221 63.8
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 3.6e-65 252.3 244 61.5
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 1.0e-64 250.8 219 65.8
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.4e-64 250.4 221 63.3
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 3.0e-64 249.2 221 62.0
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.5e-63 246.9 221 64.3
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 2.6e-63 246.1 221 62.9
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 4.4e-63 245.4 312 52.6
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 9.7e-63 244.2 224 65.6
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 2.2e-62 243.0 229 62.0
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 2.2e-62 243.0 221 63.8
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 2.8e-62 242.7 178 77.0
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 3.7e-62 242.3 221 62.0
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 8.2e-62 241.1 284 53.2
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 3.1e-61 239.2 221 61.1
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 3.1e-61 239.2 219 61.6
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 7.0e-61 238.0 221 59.7
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 9.1e-61 237.7 221 60.6
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.2e-60 237.3 220 62.7
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 2.6e-60 236.1 221 62.4
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.3e-59 233.8 222 59.5
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.3e-59 233.8 297 51.5
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 5.0e-59 231.9 220 60.9
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 1.1e-58 230.7 221 59.7
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 2.1e-57 226.5 222 59.9
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 1.5e-55 220.3 221 58.4
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 3.3e-55 219.2 223 61.4
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 2.6e-52 209.5 218 54.1
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 4.0e-48 195.7 221 53.4
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 8.8e-48 194.5 223 56.5
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.2e-47 194.1 121 87.6
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.2e-41 174.1 218 45.4
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.1e-41 173.3 218 45.4
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 4.7e-41 172.2 219 46.6
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 4.7e-41 172.2 218 45.9
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 1.7e-38 163.7 106 82.1
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.7e-35 153.7 221 39.4
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 1.5e-34 150.6 130 63.8
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 3.0e-32 142.9 202 44.1
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 3.0e-32 142.9 240 41.2
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 4.0e-32 142.5 167 50.3
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 6.8e-32 141.7 106 73.6
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 9.2e-29 131.3 81 87.7
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 7.8e-28 128.3 80 87.5
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.9e-27 125.9 227 35.7
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 1.4e-21 107.5 179 40.2
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 6.6e-19 98.6 123 45.5
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.5e-15 87.4 110 44.5
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 3.4e-15 86.3 110 43.6
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.7e-14 84.0 102 51.0
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 2.2e-14 83.6 110 43.6
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.2e-12 77.8 69 53.6
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 7.8e-12 75.1 53 71.7
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 5.1e-11 72.4 40 87.5
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.1e-10 71.2 40 85.0
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 3.1e-08 63.2 149 27.5
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 5.2e-08 62.4 63 47.6
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 8.9e-08 61.6 56 50.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 8.9e-08 61.6 56 50.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 8.9e-08 61.6 56 50.0


User provided reference genes

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