Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 3.7e-171 604.7 300 100.0
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 2.9e-83 312.8 297 57.9
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.2e-76 290.8 295 53.2
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.5e-68 262.7 272 53.7
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.0e-67 261.2 303 50.5
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 9.4e-66 254.6 296 46.6
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.2e-65 254.2 296 50.0
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 2.7e-65 253.1 295 47.5
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 4.4e-63 245.7 299 46.2
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 5.7e-63 245.4 307 47.9
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.3e-62 244.2 294 48.3
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 1.3e-62 244.2 292 47.3
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 4.9e-62 242.3 297 46.5
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.1e-61 241.1 300 46.7
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.4e-61 240.7 302 45.4
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 3.1e-61 239.6 292 45.9
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 5.4e-61 238.8 297 48.1
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 9.2e-61 238.0 295 46.8
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.6e-60 237.3 289 47.1
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 2.0e-60 236.9 298 45.0
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 3.5e-60 236.1 292 47.3
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 5.9e-60 235.3 279 45.9
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.7e-59 233.8 292 47.3
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 2.3e-59 233.4 299 44.5
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 8.6e-59 231.5 303 45.2
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 8.6e-59 231.5 309 45.0
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 8.6e-59 231.5 301 46.5
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.9e-58 230.3 302 44.0
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 3.3e-58 229.6 298 46.0
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.3e-58 229.6 303 45.5
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 4.3e-58 229.2 293 44.0
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 9.5e-58 228.0 296 44.3
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 9.5e-58 228.0 296 45.9
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 2.1e-57 226.9 299 45.5
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 2.1e-57 226.9 297 42.4
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 6.1e-57 225.3 293 43.7
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 8.0e-57 224.9 296 44.6
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.4e-56 224.2 293 43.3
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 1.4e-56 224.2 295 46.1
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.4e-56 224.2 300 44.7
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.0e-56 223.0 301 44.5
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 3.0e-56 223.0 298 43.3
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 5.2e-56 222.2 296 43.6
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 5.2e-56 222.2 301 44.9
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.2e-56 222.2 301 44.9
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 2.0e-55 220.3 293 43.7
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 2.6e-55 219.9 294 43.5
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 3.4e-55 219.5 308 40.9
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.4e-55 219.2 301 44.2
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 5.7e-55 218.8 295 42.7
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 7.5e-55 218.4 294 42.5
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 9.8e-55 218.0 301 43.9
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 3.7e-54 216.1 292 45.2
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.1e-53 214.5 298 42.6
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.4e-53 214.2 292 43.2
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 2.4e-53 213.4 296 41.6
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 5.4e-53 212.2 295 43.7
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 9.2e-53 211.5 298 41.9
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.7e-52 209.9 299 43.1
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 3.5e-52 209.5 296 40.9
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.3e-51 207.6 320 40.9
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.3e-51 207.6 295 44.1
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 8.6e-51 204.9 295 42.7
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.5e-50 204.1 305 41.0
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.5e-50 204.1 332 38.3
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.5e-50 203.4 298 42.3
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 5.6e-50 202.2 298 41.9
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 4.7e-49 199.1 296 43.9
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 4.0e-48 196.1 294 42.2
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 5.2e-48 195.7 289 41.2
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.2e-47 194.5 248 44.0
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 3.4e-47 193.0 288 39.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.9e-46 189.9 290 39.3
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 4.9e-46 189.1 288 39.9
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.0e-43 181.4 288 38.5
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 1.3e-43 181.0 288 38.2
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 3.0e-43 179.9 288 38.2
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 5.0e-43 179.1 279 38.7
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.1e-42 177.9 208 47.1
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 2.8e-41 173.3 212 49.1
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.3e-40 170.2 301 38.9
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.0e-39 167.2 201 47.8
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.6e-39 166.8 332 35.8
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.4e-37 161.0 227 41.9
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 5.4e-37 159.1 194 45.9
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.2e-36 157.9 159 54.7
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.6e-36 157.5 287 33.4
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 2.1e-36 157.1 237 40.9
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.3e-35 154.5 291 37.1
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 6.6e-35 152.1 142 56.3
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 4.3e-34 149.4 293 37.2
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 6.2e-33 145.6 247 36.4
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.4e-32 144.4 300 34.3
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 2.3e-32 143.7 157 47.8
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.6e-28 131.0 230 36.1
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 4.6e-28 129.4 159 44.0
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 6.0e-28 129.0 221 36.7
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 7.8e-28 128.6 257 33.9
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.0e-27 128.3 270 32.2
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.0e-27 128.3 232 35.3
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.3e-27 127.9 301 32.2
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.9e-26 124.0 272 31.2
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 5.2e-24 115.9 216 33.8
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.5e-23 114.4 290 31.4
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 7.6e-23 112.1 218 34.9
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 9.9e-23 111.7 137 46.7
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.3e-22 111.3 111 55.9
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.3e-22 111.3 244 32.4
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.2e-21 106.3 112 55.4
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 7.1e-21 105.5 345 28.1
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 7.1e-21 105.5 103 56.3
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.2e-20 104.8 125 50.4
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 2.7e-20 103.6 109 51.4
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 1.1e-18 98.2 75 70.7
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.5e-18 97.1 209 33.0
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 1.4e-16 91.3 197 29.9
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.4e-15 86.7 117 41.9
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 8.4e-14 82.0 103 42.7
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.3e-13 78.6 81 55.6
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.3e-13 78.6 81 55.6
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.0e-11 75.1 62 64.5
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 3.0e-11 73.6 62 62.9
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 3.0e-11 73.6 186 29.0
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.1e-10 71.6 62 59.7
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.4e-07 60.1 61 52.5
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 6.4e-06 55.8 45 51.1


User provided reference genes

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