Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold192G40536 Striga asiatica HOM05D000156 ORTHO05D005692 2.2e-200 702.2 377 100.0
MSTRG.27024 Avicennia marina HOM05D000156 ORTHO05D005692 3.0e-93 346.3 454 54.2
Migut.F00207 Erythranthe guttata HOM05D000156 ORTHO05D005692 1.5e-89 334.0 469 52.9
SalBow4G2739 Salvia bowleyana HOM05D000156 ORTHO05D005692 4.3e-84 315.8 425 54.8
Hma1.2p1_0404F.1_g145330 Hydrangea macrophylla HOM05D000156 ORTHO05D005692 1.1e-79 301.2 463 49.9
MSTRG.8650 Avicennia marina HOM05D000156 ORTHO05D005692 1.3e-75 287.7 430 49.5
Nitab4.5_0007005g0030 Nicotiana tabacum HOM05D000156 ORTHO05D005692 5.7e-68 262.3 475 46.7
Nitab4.5_0005393g0020 Nicotiana tabacum HOM05D000156 ORTHO05D005692 2.2e-67 260.4 472 47.2
Actinidia34224 Actinidia chinensis HOM05D000156 ORTHO05D005692 2.8e-67 260.0 452 46.9
Oeu037178.1 Olea europaea HOM05D000156 ORTHO05D005692 2.4e-66 256.9 447 46.5
Oeu037179.1 Olea europaea HOM05D000156 ORTHO05D005692 2.4e-66 256.9 447 46.5
QL09p008741 Quercus lobata HOM05D000156 ORTHO05D005692 3.1e-66 256.5 456 44.3
PGSC0003DMG400009086 Solanum tuberosum HOM05D000156 ORTHO05D005692 2.2e-64 250.4 475 46.3
TAR629G1391 Trochodendron aralioides HOM05D000156 ORTHO05D005692 6.5e-64 248.8 473 43.6
CSS0002181 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D005692 1.6e-62 244.2 456 46.5
Dinv29275 Davidia involucrata HOM05D000156 ORTHO05D005692 2.7e-62 243.4 390 47.9
Cc02_g01500 Coffea canephora HOM05D000156 ORTHO05D005692 8.0e-62 241.9 465 45.6
MD07G1288000 Malus domestica HOM05D000156 ORTHO05D005692 8.0e-62 241.9 481 42.8
DCAR_020324 Daucus carota HOM05D000156 ORTHO05D005692 5.2e-61 239.2 465 43.4
Lj1C1021T2 Lonicera japonica HOM05D000156 ORTHO05D005692 2.6e-60 236.9 426 49.1
vmacro10124 Vaccinium macrocarpon HOM05D000156 ORTHO05D005692 5.7e-60 235.7 464 45.7
Actinidia08652 Actinidia chinensis HOM05D000156 ORTHO05D005692 9.7e-60 235.0 451 43.7
Haze_00207 Corylus avellana HOM05D000156 ORTHO05D005692 2.8e-59 233.4 472 44.9
CiPaw.05G197300 Carya illinoinensis HOM05D000156 ORTHO05D005692 4.5e-57 226.1 468 42.5
Cfa016234 Carpinus fangiana HOM05D000156 ORTHO05D005692 5.9e-57 225.7 471 44.2
CAN.G481.15 Capsicum annuum HOM05D000156 ORTHO05D005692 7.7e-57 225.3 469 40.9
FAN10G0121 Fragaria x ananassa HOM05D000156 ORTHO05D005692 7.7e-57 225.3 480 42.5
Manes.02G143900 Manihot esculenta HOM05D000156 ORTHO05D005692 7.7e-57 225.3 478 44.1
Prupe.2G309500 Prunus persica HOM05D000156 ORTHO05D005692 1.0e-56 224.9 481 40.1
FAN01G1839 Fragaria x ananassa HOM05D000156 ORTHO05D005692 1.3e-56 224.6 480 44.2
FAN10G3506 Fragaria x ananassa HOM05D000156 ORTHO05D005692 1.3e-56 224.6 480 42.1
Manes.01G183800 Manihot esculenta HOM05D000156 ORTHO05D005692 1.7e-56 224.2 431 43.2
Eucgr.A01455 Eucalyptus grandis HOM05D000156 ORTHO05D005692 2.9e-56 223.4 485 40.2
GSVIVG01038556001 Vitis vinifera HOM05D000156 ORTHO05D005692 2.9e-56 223.4 469 42.2
Dinv35340 Davidia involucrata HOM05D000156 ORTHO05D005692 5.0e-56 222.6 403 46.2
FAN06G0347 Fragaria x ananassa HOM05D000156 ORTHO05D005692 5.0e-56 222.6 480 41.7
Lj1C1018T7 Lonicera japonica HOM05D000156 ORTHO05D005692 5.0e-56 222.6 474 44.7
Glyma.04G235400 Glycine max HOM05D000156 ORTHO05D005692 6.5e-56 222.2 462 42.4
FAN03G3454 Fragaria x ananassa HOM05D000156 ORTHO05D005692 1.1e-55 221.5 480 43.5
FAN06G2724 Fragaria x ananassa HOM05D000156 ORTHO05D005692 1.5e-55 221.1 480 41.7
RcHm_v2.0_Chr1g0380521 Rosa chinensis HOM05D000156 ORTHO05D005692 2.5e-55 220.3 480 44.2
FvH4_7g31490 Fragaria vesca HOM05D000156 ORTHO05D005692 4.2e-55 219.5 480 41.5
Psat6g034760 Pisum sativum HOM05D000156 ORTHO05D005692 3.0e-53 213.4 482 40.5
Cpa.g.sc3.92 Carica papaya HOM05D000156 ORTHO05D005692 4.0e-53 213.0 445 43.1
Potri.012G016200 Populus trichocarpa HOM05D000156 ORTHO05D005692 6.8e-53 212.2 473 40.0
Sopen03g022890 Solanum pennellii HOM05D000156 ORTHO05D005692 6.8e-53 212.2 475 44.0
CSS0044772 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D005692 1.2e-52 211.5 455 41.3
Potri.015G012500 Populus trichocarpa HOM05D000156 ORTHO05D005692 1.2e-52 211.5 475 40.0
Rhsim09G0205900 Rhododendron simsii HOM05D000156 ORTHO05D005692 2.6e-52 210.3 466 41.6
CiPaw.06G045900 Carya illinoinensis HOM05D000156 ORTHO05D005692 3.4e-52 209.9 470 41.7
MD01G1218100 Malus domestica HOM05D000156 ORTHO05D005692 9.8e-52 208.4 478 40.4
Atru.chr12.2221 Acer truncatum HOM05D000156 ORTHO05D005692 6.3e-51 205.7 464 42.0
Lj3A904T80 Lonicera japonica HOM05D000156 ORTHO05D005692 8.3e-51 205.3 467 40.7
Gohir.A12G249600 Gossypium hirsutum HOM05D000156 ORTHO05D005692 1.4e-50 204.5 474 40.5
TWI14G0702 Tripterygium wilfordii HOM05D000156 ORTHO05D005692 4.1e-50 203.0 456 41.4
Duzib205G0054 Durio zibethinus HOM05D000156 ORTHO05D005692 9.1e-50 201.8 474 40.5
Phvul.009G052200 Phaseolus vulgaris HOM05D000156 ORTHO05D005692 1.2e-49 201.4 465 40.4
Gohir.D12G250400 Gossypium hirsutum HOM05D000156 ORTHO05D005692 2.0e-49 200.7 474 40.3
Ciclev10019884m.g Citrus clementina HOM05D000156 ORTHO05D005692 2.7e-49 200.3 489 39.7
Gorai.008G268500 Gossypium raimondii HOM05D000156 ORTHO05D005692 2.7e-49 200.3 474 40.3
Nn1g00265 Nelumbo nucifera HOM05D000156 ORTHO05D005692 4.5e-49 199.5 456 40.6
Lalb_Chr08g0240211 Lupinus albus HOM05D000156 ORTHO05D005692 5.9e-49 199.1 462 38.3
Sabra12G0015800 Salix brachista HOM05D000156 ORTHO05D005692 5.9e-49 199.1 452 40.9
Sed0011018 Sechium edule HOM05D000156 ORTHO05D005692 1.0e-48 198.4 476 38.9
Thecc.03G199800 Theobroma cacao HOM05D000156 ORTHO05D005692 2.9e-48 196.8 477 40.5
HanXRQChr01g0020471 Helianthus annuus HOM05D000156 ORTHO05D005692 5.0e-48 196.1 447 42.3
Duzib084G0055 Durio zibethinus HOM05D000156 ORTHO05D005692 8.5e-48 195.3 470 39.4
ClCG05G008970 Citrullus lanatus HOM05D000156 ORTHO05D005692 3.2e-47 193.4 435 40.9
PGR042G0912 Punica granatum HOM05D000156 ORTHO05D005692 1.2e-46 191.4 496 40.7
VMungo1309G2989 Vigna mungo HOM05D000156 ORTHO05D005692 1.6e-46 191.0 432 39.8
CsaV3_3G019820 Cucumis sativus L. HOM05D000156 ORTHO05D005692 1.4e-45 188.0 444 39.9
Glyma.06G129300 Glycine max HOM05D000156 ORTHO05D005692 1.8e-45 187.6 458 41.3
TPR.G11989 Trifolium pratense HOM05D000156 ORTHO05D005692 5.2e-45 186.0 481 38.5
Gorai.004G114300 Gossypium raimondii HOM05D000156 ORTHO05D005692 2.0e-44 184.1 471 38.6
Glyma.14G159300 Glycine max HOM05D000156 ORTHO05D005692 2.6e-44 183.7 466 41.6
Phvul.001G075300 Phaseolus vulgaris HOM05D000156 ORTHO05D005692 2.6e-44 183.7 463 41.0
ECA248G0969 Erigeron canadensis HOM05D005282 ORTHO05D002071 3.4e-44 183.3 436 42.0
Ca_16710_v3 Cicer arietinum L. HOM05D000156 ORTHO05D005692 5.7e-44 182.6 449 38.1
CANSAT21G2206 Cannabis sativa HOM05D000156 ORTHO05D005692 7.5e-44 182.2 447 40.7
MELO3C008499.2 Cucumis melo HOM05D000156 ORTHO05D005692 1.3e-43 181.4 484 38.4
Gohir.A08G095724 Gossypium hirsutum HOM05D000156 ORTHO05D005692 1.7e-43 181.0 473 38.9
Lalb_Chr23g0271611 Lupinus albus HOM05D000156 ORTHO05D005692 8.3e-43 178.7 457 37.6
Gohir.D08G107000 Gossypium hirsutum HOM05D000156 ORTHO05D005692 1.8e-42 177.6 471 38.2
arahy.Tifrunner.gnm1.ann1.733TCI Arachis hypogaea HOM05D000156 ORTHO05D005692 2.4e-42 177.2 400 42.8
Peaxi162Scf00740g00112 Petunia axillaris HOM05D000156 ORTHO05D005692 2.4e-42 177.2 413 42.1
TAR375G0133 Trochodendron aralioides HOM05D000156 ORTHO05D005692 4.1e-42 176.4 442 36.9
Sed0003090 Sechium edule HOM05D000156 ORTHO05D005692 5.4e-42 176.0 468 36.5
Sc13g0009910 Simmondsia chinensis HOM05D000156 ORTHO05D005692 2.0e-41 174.1 442 39.4
Sabra15G0010200 Salix brachista HOM05D000156 ORTHO05D005692 1.0e-40 171.8 431 39.7
VMungo0647G1193 Vigna mungo HOM05D000156 ORTHO05D005692 1.7e-40 171.0 467 40.0
TPR.G19372 Trifolium pratense HOM05D000156 ORTHO05D005692 2.3e-40 170.6 449 39.4
Medtr3g091560 Medicago truncatula HOM05D000156 ORTHO05D005692 3.8e-40 169.9 442 38.5
COL.COLO4_16770 Corchorus olitorius HOM05D000513 ORTHO05D007779 8.6e-40 168.7 385 43.9
arahy.Tifrunner.gnm1.ann1.129FS0 Arachis hypogaea HOM05D000156 ORTHO05D005692 1.1e-39 168.3 499 38.3
MBI07_g37057_MAGBIO Magnolia biondii HOM05D000156 ORTHO05D005692 2.5e-39 167.2 451 38.8
Lj1g0012037 Lotus japonicus HOM05D000156 ORTHO05D005692 1.2e-38 164.9 455 39.1
Psat5g076800 Pisum sativum HOM05D000156 ORTHO05D005692 1.2e-38 164.9 423 39.7
Medtr1g007920 Medicago truncatula HOM05D000156 ORTHO05D005692 1.6e-38 164.5 485 35.3
Peaxi162Scf00618g00342 Petunia axillaris HOM05D000156 ORTHO05D005692 1.6e-38 164.5 401 38.4
Nn3g18974 Nelumbo nucifera HOM05D000156 ORTHO05D005692 2.8e-38 163.7 483 36.6
MBI06_g13418_MAGBIO Magnolia biondii HOM05D000156 ORTHO05D005692 8.0e-38 162.2 438 38.6
DCAR_008942 Daucus carota HOM05D000156 ORTHO05D005692 1.8e-37 161.0 395 36.5
CAN.G312.4 Capsicum annuum HOM05D000156 ORTHO05D005692 3.4e-36 156.8 463 35.4
PGSC0003DMG400019610 Solanum tuberosum HOM05D000156 ORTHO05D005692 5.7e-36 156.0 457 34.4
Aqoxy7G00069 Aquilegia oxysepala HOM05D000156 ORTHO05D005692 2.2e-35 154.1 467 37.7
Hund21008 Selenicereus undatus HOM05D000156 ORTHO05D005692 1.1e-34 151.8 469 37.3
EL10Ac3g05275 Beta vulgaris HOM05D000156 ORTHO05D005692 2.7e-33 147.1 485 37.3
Lj1g0014352 Lotus japonicus HOM05D000156 ORTHO05D005692 3.5e-33 146.7 415 36.1
Solyc06g052010.2 Solanum lycopersicum HOM05D000156 ORTHO05D005692 1.1e-31 141.7 431 35.0
Thhalv10010338m.g Eutrema salsugineum HOM05D000156 ORTHO05D005692 2.5e-31 140.6 479 35.5
Actinidia06146 Actinidia chinensis HOM05D000156 ORTHO05D005692 8.0e-30 135.6 279 38.4
AT3G49260 Arabidopsis thaliana HOM05D000156 ORTHO05D005692 1.0e-29 135.2 480 36.2
Carub.0005s1548 Capsella rubella HOM05D000156 ORTHO05D005692 1.4e-29 134.8 476 35.5
Sopen06g018060 Solanum pennellii HOM05D000156 ORTHO05D005692 8.9e-29 132.1 432 35.0
AL5G29010 Arabidopsis lyrata HOM05D000156 ORTHO05D005692 1.2e-28 131.7 481 35.3
Sp5g12820 Schrenkiella parvula HOM05D000156 ORTHO05D005692 8.3e-27 125.6 485 33.2
Ca_12790_v3 Cicer arietinum L. HOM05D000156 ORTHO05D005692 4.1e-26 123.2 249 37.3
C08p24270 Brassica napus HOM05D000156 ORTHO05D005692 1.6e-25 121.3 484 33.9
BcaB01g00733 Brassica carinata HOM05D000156 ORTHO05D005692 1.3e-24 118.2 487 33.9
Oeu041058.2 Olea europaea HOM05D000156 ORTHO05D005692 1.1e-23 115.2 362 31.5
Lalb_Chr11g0066891 Lupinus albus HOM05D000156 ORTHO05D005692 2.5e-23 114.0 128 62.5
A06p18500 Brassica napus HOM05D000156 ORTHO05D005692 4.3e-23 113.2 484 33.3
BcaB02g09582 Brassica carinata HOM05D000156 ORTHO05D005692 7.3e-23 112.5 486 33.5
Aa31LG4G17670 Aethionema arabicum HOM05D000156 ORTHO05D005692 9.5e-23 112.1 467 35.5
BolC8t50044H Brassica oleracea HOM05D000156 ORTHO05D005692 1.6e-22 111.3 488 33.4
BcaC01g02398 Brassica carinata HOM05D000156 ORTHO05D005692 2.1e-22 110.9 486 30.7
BraA06t24928Z Brassica rapa HOM05D000156 ORTHO05D005692 2.8e-22 110.5 484 32.9
CARHR158130 Cardamine hirsuta HOM05D000156 ORTHO05D005692 3.6e-22 110.2 435 33.3
BolC3t18823H Brassica oleracea HOM05D000156 ORTHO05D005692 4.0e-21 106.7 486 30.5
BraA06t25757Z Brassica rapa HOM05D000156 ORTHO05D005692 5.2e-21 106.3 486 30.7
Sed0019654 Sechium edule HOM05D000156 ORTHO05D005692 6.8e-21 105.9 418 36.1
A06p28140 Brassica napus HOM05D000156 ORTHO05D005692 8.9e-21 105.5 486 30.9
C03p65700 Brassica napus HOM05D000156 ORTHO05D005692 8.9e-21 105.5 486 30.5
ClCG00G004130 Citrullus lanatus HOM05D000156 ORTHO05D005692 8.9e-21 105.5 406 35.7
ClCG01G000410 Citrullus lanatus HOM05D000156 ORTHO05D005692 8.9e-21 105.5 406 35.7
unitig_0.g2623 Utricularia gibba HOM05D000156 ORTHO05D005692 2.6e-20 104.0 424 30.7
MELO3C005888.2 Cucumis melo HOM05D000156 ORTHO05D005692 1.7e-19 101.3 408 34.6
CsaV3_5G000470 Cucumis sativus L. HOM05D000156 ORTHO05D005692 1.1e-18 98.6 434 33.9
arahy.Tifrunner.gnm1.ann1.M0S3BS Arachis hypogaea HOM05D000156 ORTHO05D005692 9.2e-18 95.5 153 56.2
ATR0602G248 Amborella trichopoda HOM05D000156 ORTHO05D005692 1.6e-17 94.7 413 32.2
BcaC07g39397 Brassica carinata HOM05D000156 ORTHO05D005692 2.7e-17 94.0 458 31.0
Hund11658 Selenicereus undatus HOM05D000156 ORTHO05D005692 2.7e-17 94.0 128 59.4
AUR62006086 Chenopodium quinoa HOM05D000156 ORTHO05D005692 6.6e-16 89.4 252 36.9
AUR62019408 Chenopodium quinoa HOM05D000156 ORTHO05D005692 8.1e-14 82.4 256 35.2
THA.LOC104815133 Tarenaya hassleriana HOM05D000156 ORTHO05D005692 1.2e-12 78.6 398 28.9
HPP92_027390 Vanilla planifolia HOM05D000156 ORTHO05D005692 9.9e-12 75.5 133 47.4
CDE02G3200 Ceratophyllum demersum HOM05D000156 ORTHO05D005692 1.4e-10 71.6 383 27.2
Lalb_Chr11g0066901 Lupinus albus HOM05D000156 ORTHO05D005692 1.9e-10 71.2 139 35.3
PSO135G0779 Papaver somniferum HOM05D000156 ORTHO05D005692 1.6e-09 68.2 454 27.1
Lsat_1_v5_gn_1_95580 Lactuca sativa HOM05D000156 ORTHO05D005692 2.7e-09 67.4 225 34.7
PSO384G4407 Papaver somniferum HOM05D000156 ORTHO05D005692 1.0e-08 65.5 441 27.0


User provided reference genes

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