Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 3.0e-216 755.0 405 100.0
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.3e-174 616.7 405 81.5
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 6.3e-174 614.4 450 72.4
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 7.8e-172 607.4 402 79.4
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 2.3e-171 605.9 402 75.9
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.2e-169 600.1 402 76.9
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 2.1e-169 599.4 403 77.4
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 1.0e-168 597.0 400 78.8
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.8e-168 596.3 403 76.9
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.3e-168 595.9 402 76.4
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 2.3e-168 595.9 402 78.4
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.0e-167 592.8 403 76.7
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 2.9e-166 589.0 402 76.4
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.9e-166 589.0 402 75.4
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 3.7e-166 588.6 400 76.8
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 4.9e-166 588.2 402 74.9
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.1e-165 587.0 400 74.2
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.8e-165 586.3 450 71.1
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 4.1e-165 585.1 400 75.8
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 7.0e-165 584.3 400 75.8
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.6e-164 583.2 400 76.8
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.5e-164 582.0 400 76.8
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 3.5e-164 582.0 440 72.3
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 5.9e-164 581.3 402 76.1
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.9e-163 578.6 403 77.4
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 5.0e-163 578.2 399 74.2
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 2.5e-162 575.9 404 73.3
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.5e-162 575.9 407 74.0
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 3.3e-162 575.5 401 73.3
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 3.3e-162 575.5 401 73.3
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.3e-162 575.5 407 74.0
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 5.6e-162 574.7 402 73.1
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 5.6e-162 574.7 407 73.7
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 5.6e-162 574.7 400 74.8
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 5.6e-162 574.7 400 73.2
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 7.3e-162 574.3 409 75.1
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.5e-162 573.9 407 74.0
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.2e-161 573.5 400 73.0
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.2e-161 573.5 400 73.0
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.6e-161 573.2 402 73.6
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.8e-161 572.4 409 74.8
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.4e-160 570.1 405 73.3
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.4e-160 570.1 405 73.3
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.4e-160 570.1 402 74.1
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.3e-160 569.3 407 74.0
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.3e-160 569.3 403 75.2
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 4.0e-160 568.5 405 74.6
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 5.2e-160 568.2 402 72.9
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 6.8e-160 567.8 402 73.9
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 8.9e-160 567.4 402 74.6
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.2e-159 567.0 400 73.2
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.2e-159 567.0 415 71.1
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.5e-159 566.6 399 74.7
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.0e-159 566.2 407 72.7
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 1.3e-158 563.5 400 74.0
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.7e-158 563.1 402 73.9
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 4.9e-158 561.6 402 74.1
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 4.9e-158 561.6 400 72.8
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.2e-156 557.0 402 71.1
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.2e-156 557.0 400 71.5
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.0e-156 556.2 403 73.4
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.7e-156 555.8 405 71.9
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 3.5e-156 555.4 400 72.8
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 4.6e-156 555.1 400 71.0
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 7.8e-156 554.3 403 73.0
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.0e-155 553.9 405 72.1
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.0e-155 553.9 408 70.6
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.3e-155 553.5 400 72.8
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 3.0e-155 552.4 400 73.8
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 8.6e-155 550.8 405 70.4
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.1e-154 550.4 402 72.4
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 9.5e-154 547.4 400 71.0
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 1.6e-153 546.6 402 71.9
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.1e-153 546.2 402 70.4
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 4.7e-153 545.0 402 71.9
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 6.2e-153 544.7 400 69.5
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 6.2e-153 544.7 389 71.7
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 1.4e-152 543.5 400 71.0
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.4e-152 543.5 405 72.1
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 2.3e-152 542.7 406 71.4
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 6.8e-152 541.2 408 70.6
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 6.8e-152 541.2 437 65.0
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.5e-151 540.0 402 70.1
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 4.4e-151 538.5 406 71.4
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 5.8e-151 538.1 406 71.4
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 5.8e-151 538.1 403 72.0
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 9.9e-151 537.3 410 70.0
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 1.1e-149 533.9 406 71.2
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.4e-149 533.5 401 69.1
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.9e-149 533.1 398 67.8
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.6e-148 530.0 401 71.1
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 3.5e-148 528.9 406 70.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 6.0e-148 528.1 401 70.1
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 6.0e-148 528.1 406 69.5
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.0e-147 527.3 406 70.7
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.0e-147 527.3 401 66.3
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.3e-147 526.9 406 69.5
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 3.0e-147 525.8 406 69.5
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.9e-147 525.4 402 70.9
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.1e-147 525.0 412 69.9
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.1e-146 523.9 401 71.6
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.9e-146 523.1 426 64.1
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.3e-146 522.3 402 67.7
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.3e-146 521.9 400 67.5
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.3e-146 521.9 400 67.5
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.4e-144 516.9 398 65.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 5.2e-144 515.0 403 68.7
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 4.9e-142 508.4 405 68.1
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 3.2e-141 505.8 401 64.3
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 4.6e-140 501.9 406 66.3
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 7.8e-140 501.1 400 65.5
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 2.3e-139 499.6 399 64.2
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 8.7e-139 497.7 416 66.1
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 5.6e-138 495.0 405 62.2
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 2.8e-137 492.7 403 67.5
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.5e-135 486.9 404 66.3
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.2e-133 478.8 400 64.0
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 2.9e-126 456.1 358 64.8
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-122 444.1 520 52.3
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.1e-122 444.1 332 72.3
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.5e-122 443.0 439 60.4
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.4e-120 437.2 377 62.3
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 6.9e-120 434.9 295 76.3
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 5.5e-117 425.2 337 65.9
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 7.1e-117 424.9 435 58.4
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 5.6e-114 415.2 404 55.0
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 7.1e-109 398.3 406 58.6
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.4e-104 383.3 406 52.7
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.4e-104 383.3 406 52.7
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 4.8e-97 359.0 399 49.6
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 9.4e-93 344.7 401 55.1
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 3.1e-88 329.7 402 46.0
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 9.1e-80 301.6 407 49.6
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 5.2e-75 285.8 197 76.1
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 7.5e-66 255.4 425 41.4
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.8e-64 250.8 353 44.2
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 3.4e-58 229.9 283 52.7
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.7e-57 227.6 304 44.7
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.5e-53 214.5 151 76.2
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.7e-41 174.5 147 68.0
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 2.4e-40 170.6 105 84.8
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.8e-25 120.2 95 62.1
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 7.8e-23 112.5 410 27.6
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.3e-22 110.9 82 75.6
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 3.0e-22 110.5 94 62.8
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.9e-21 107.8 123 51.2
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 7.3e-21 105.9 69 72.5
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.6e-20 103.6 187 41.7
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 6.9e-19 99.4 70 68.6
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 3.2e-16 90.5 60 70.0
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 7.1e-16 89.4 447 27.1
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.7e-14 84.7 62 64.5
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 6.6e-14 82.8 452 25.9
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.1e-12 77.8 392 24.2
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.2e-10 72.0 113 46.9
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.9e-09 67.4 55 65.5
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 8.7e-06 55.8 28 82.1
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 8.7e-06 55.8 58 58.6


User provided reference genes

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