Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 0.0e+00 1461.4 745 100.0
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 0.0e+00 1141.7 745 79.6
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 0.0e+00 1107.4 746 76.9
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.0e-311 1072.8 747 74.2
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.9e-309 1065.4 741 75.0
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.1e-304 1047.7 722 74.5
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 2.3e-299 1031.9 752 71.7
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 6.8e-299 1030.4 747 71.2
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-297 1025.8 744 71.1
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.3e-294 1016.1 746 69.8
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 4.3e-293 1011.1 717 72.1
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 6.2e-292 1007.3 746 69.8
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.3e-291 1005.4 744 69.6
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 2.3e-291 1005.4 746 70.4
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.2e-291 1004.2 768 68.1
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 8.9e-291 1003.4 748 69.4
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.3e-289 999.6 723 71.9
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.3e-289 999.6 744 70.4
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.4e-288 996.1 765 69.3
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 9.6e-285 983.4 753 68.0
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.4e-283 979.5 717 70.6
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 8.9e-283 976.9 745 68.5
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 8.9e-283 976.9 736 69.2
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 4.4e-282 974.5 745 67.9
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 2.9e-281 971.8 727 68.8
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 2.9e-281 971.8 748 67.2
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 8.4e-281 970.3 738 68.3
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 1.4e-280 969.5 747 67.2
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 2.1e-279 965.7 815 63.7
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 2.1e-279 965.7 750 68.1
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 2.7e-279 965.3 745 67.9
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.6e-279 964.5 739 68.2
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.6e-279 964.5 747 66.8
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 4.6e-279 964.5 740 67.8
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.3e-278 963.0 747 66.8
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 2.3e-278 962.2 728 67.3
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.1e-278 961.1 747 66.8
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 6.6e-278 960.7 739 68.1
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.9e-277 959.1 750 66.7
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 3.3e-277 958.4 746 67.2
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 7.3e-277 957.2 684 71.6
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.1e-275 953.4 747 67.1
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.4e-275 952.2 751 66.0
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 5.8e-274 947.6 738 67.3
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 7.6e-274 947.2 725 67.6
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 7.6e-274 947.2 746 66.5
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.7e-273 946.0 743 66.1
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 6.4e-273 944.1 683 71.6
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 6.4e-273 944.1 752 65.8
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 9.3e-272 940.3 738 66.4
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.1e-271 939.1 722 67.6
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.0e-270 936.8 752 65.3
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.3e-270 936.4 774 64.2
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 2.3e-270 935.6 712 69.7
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 3.9e-270 934.9 743 65.3
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.1e-269 933.3 738 66.1
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 2.5e-269 932.2 745 64.6
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 5.6e-269 931.0 728 65.9
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 9.6e-269 930.2 739 67.0
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 4.8e-268 927.9 746 65.3
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 8.1e-268 927.2 740 65.5
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.5e-266 922.9 749 65.6
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.3e-265 919.8 735 64.4
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 2.9e-265 918.7 739 65.4
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 3.2e-264 915.2 719 65.6
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.2e-263 913.3 727 66.4
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 2.5e-261 905.6 753 64.1
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 4.3e-261 904.8 751 64.2
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 7.4e-261 904.0 721 64.6
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.6e-260 902.9 749 62.9
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.8e-260 902.1 773 63.6
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 4.0e-259 898.3 745 63.4
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 9.0e-259 897.1 746 63.7
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.5e-258 896.3 745 63.1
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 5.8e-258 894.4 741 63.3
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 2.9e-257 892.1 737 63.4
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.4e-256 889.8 746 63.1
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.9e-256 889.4 744 63.0
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 3.2e-256 888.6 682 66.6
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.2e-255 886.7 746 63.1
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.6e-255 886.3 758 62.0
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 3.5e-255 885.2 747 63.1
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 6.0e-255 884.4 745 62.4
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.3e-254 883.2 735 63.5
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.3e-254 882.5 655 69.5
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 8.7e-254 880.6 752 62.0
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 8.7e-254 880.6 746 62.1
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 3.3e-253 878.6 746 62.3
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 4.3e-253 878.2 752 62.1
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 4.3e-253 878.2 736 63.3
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 7.4e-253 877.5 752 62.0
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.1e-251 873.6 701 65.9
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 5.3e-251 871.3 749 61.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 3.4e-250 868.6 747 61.6
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 3.8e-249 865.1 748 61.8
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 4.2e-248 861.7 757 61.2
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 4.3e-245 851.7 741 61.8
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 4.3e-245 851.7 741 60.6
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 4.8e-244 848.2 730 61.5
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 8.2e-244 847.4 747 61.8
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 5.3e-243 844.7 657 67.3
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.2e-242 843.6 737 60.0
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.0e-241 840.5 684 64.9
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 8.5e-241 837.4 686 63.1
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.4e-238 830.1 727 61.3
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 6.7e-238 827.8 748 58.8
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 5.7e-237 824.7 769 59.3
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 8.2e-236 820.8 745 59.1
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.0e-230 803.9 733 58.4
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.6e-226 790.0 622 67.7
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 5.0e-225 785.0 756 58.6
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.2e-223 780.4 745 58.0
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.6e-223 780.0 731 56.8
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 2.1e-223 779.6 760 58.3
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 8.5e-217 757.7 667 63.3
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 7.5e-213 744.6 735 55.6
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.8e-211 740.0 597 66.0
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.3e-209 733.8 617 64.2
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.5e-209 731.5 534 70.8
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.9e-208 729.9 565 68.8
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.9e-208 729.9 726 56.3
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 5.5e-208 728.4 749 53.4
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 5.4e-203 711.8 741 55.6
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-202 710.3 748 54.8
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.5e-202 709.1 527 70.2
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.8e-191 672.9 575 61.9
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 4.7e-191 672.2 692 53.5
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 7.3e-184 648.3 685 52.3
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 2.1e-175 620.2 515 63.5
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.6e-167 594.0 696 48.3
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 2.0e-141 507.3 915 37.9
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.2e-140 503.8 625 48.8
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.1e-137 492.7 357 69.7
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 4.1e-110 403.3 466 51.5
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.1e-106 391.0 276 72.5
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.7e-105 386.0 277 71.8
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.2e-93 348.6 367 52.0
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 8.0e-90 335.9 536 39.2
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.4e-78 298.5 322 52.2
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.1e-51 209.1 277 46.2
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.5e-51 208.8 564 32.4
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.1e-50 204.9 187 57.8
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-41 176.0 121 75.2
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.0e-41 172.9 161 59.0
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.4e-38 165.6 131 64.1
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 5.3e-33 147.1 323 35.9
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 2.0e-32 145.2 364 34.3
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 7.1e-30 136.7 124 56.5
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 2.1e-29 135.2 179 44.7
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 2.7e-29 134.8 139 51.8
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 4.0e-25 120.9 177 42.9
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 3.4e-24 117.9 321 30.8
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.3e-23 115.9 121 53.7
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 6.5e-15 87.0 88 53.4
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 8.8e-12 76.6 56 64.3
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 3.3e-11 74.7 58 63.8
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 7.4e-11 73.6 85 47.1
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 4.1e-09 67.8 65 49.2
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.2e-08 66.2 42 76.2
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 1.5e-08 65.9 298 27.2
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.2e-07 62.0 94 44.7
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-07 61.2 89 43.8
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-07 61.2 89 43.8


User provided reference genes

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