Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 2.3e-131 472.2 235 100.0
SGA_v2.0_scaffold20G09225 Striga asiatica HOM05D004038 ORTHO05D004619 3.7e-25 119.4 88 75.0
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.1e-24 117.9 97 63.9
SGA_v2.0_scaffold20G09195 Striga asiatica HOM05D048792 ORTHO05D399554 9.5e-21 104.8 189 41.3
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.6e-18 96.7 100 57.0
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 3.4e-18 96.3 100 56.0
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 7.5e-18 95.1 102 52.9
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.5e-18 95.1 91 59.3
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.5e-18 95.1 91 59.3
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 7.5e-18 95.1 97 57.7
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 7.5e-18 95.1 97 57.7
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 9.8e-18 94.7 100 57.0
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 9.8e-18 94.7 100 56.0
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 9.8e-18 94.7 100 57.0
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.3e-17 94.4 100 55.0
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.2e-17 93.6 100 55.0
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.2e-17 93.6 100 55.0
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 2.2e-17 93.6 85 65.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.9e-17 93.2 111 50.5
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 3.7e-17 92.8 100 53.0
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 3.7e-17 92.8 100 55.0
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.7e-17 92.8 100 55.0
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.7e-17 92.8 100 55.0
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.7e-17 92.8 100 55.0
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 3.7e-17 92.8 100 56.0
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.7e-17 92.8 100 54.0
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 3.7e-17 92.8 100 54.0
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.7e-17 92.8 100 55.0
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 4.9e-17 92.4 97 54.6
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 6.4e-17 92.0 104 53.8
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 6.4e-17 92.0 111 49.5
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.4e-17 92.0 100 55.0
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 6.4e-17 92.0 88 61.4
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 8.3e-17 91.7 100 53.0
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 8.3e-17 91.7 100 53.0
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 8.3e-17 91.7 100 53.0
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 8.3e-17 91.7 100 53.0
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 8.3e-17 91.7 100 53.0
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.1e-16 91.3 100 54.0
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.1e-16 91.3 100 53.0
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.1e-16 91.3 91 59.3
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.4e-16 90.9 100 54.0
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.4e-16 90.9 100 53.0
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.4e-16 90.9 91 57.1
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.4e-16 90.1 100 52.0
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 2.4e-16 90.1 100 52.0
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.4e-16 90.1 111 48.6
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.4e-16 90.1 91 58.2
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.4e-16 90.1 85 64.7
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 3.2e-16 89.7 100 52.0
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 3.2e-16 89.7 100 53.0
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.2e-16 89.7 106 54.7
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.1e-16 89.4 100 52.0
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 5.4e-16 89.0 100 52.0
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 5.4e-16 89.0 100 52.0
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 5.4e-16 89.0 100 53.0
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 5.4e-16 89.0 100 51.0
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.4e-16 89.0 100 52.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 7.0e-16 88.6 100 52.0
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 7.0e-16 88.6 91 57.1
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 7.0e-16 88.6 100 52.0
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 9.2e-16 88.2 100 53.0
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 9.2e-16 88.2 100 53.0
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 1.2e-15 87.8 100 51.0
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.0e-15 87.0 100 52.0
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 2.0e-15 87.0 100 52.0
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.7e-15 86.7 99 53.5
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.7e-15 86.7 100 51.0
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 2.7e-15 86.7 100 51.0
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.5e-15 86.3 100 51.0
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.5e-15 86.3 100 51.0
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 3.5e-15 86.3 100 53.0
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.5e-15 86.3 100 51.0
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 4.6e-15 85.9 100 51.0
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 5.9e-15 85.5 100 51.0
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.9e-15 85.5 100 51.0
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.0e-14 84.7 84 59.5
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.0e-14 84.7 89 57.3
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.3e-14 84.3 85 58.8
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 1.7e-14 84.0 77 59.7
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.7e-14 84.0 77 59.7
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.7e-14 84.0 88 55.7
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 1.7e-14 84.0 100 50.0
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.3e-14 83.6 97 51.5
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 2.3e-14 83.6 97 51.5
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.3e-14 83.6 101 49.5
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.3e-14 83.6 91 51.6
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 3.0e-14 83.2 100 49.0
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.9e-14 82.8 91 53.8
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 3.9e-14 82.8 100 48.0
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.9e-14 82.8 90 55.6
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 5.0e-14 82.4 78 64.1
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 6.6e-14 82.0 100 48.0
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 6.6e-14 82.0 78 62.8
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 8.6e-14 81.6 90 53.3
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 8.6e-14 81.6 78 64.1
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 8.6e-14 81.6 94 53.2
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.6e-14 81.6 89 56.2
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.1e-13 81.3 100 48.0
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.5e-13 80.9 102 50.0
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.5e-13 80.9 78 61.5
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.5e-13 80.9 78 61.5
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.5e-13 80.9 78 62.8
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 1.5e-13 80.9 78 61.5
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.5e-13 80.9 78 64.1
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.5e-13 80.9 78 61.5
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 3.3e-13 79.7 97 49.5
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 5.6e-13 79.0 97 48.5
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 5.6e-13 79.0 97 47.4
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 7.3e-13 78.6 97 47.4
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 7.3e-13 78.6 111 41.4
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 7.3e-13 78.6 97 48.5
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.2e-12 77.8 97 46.4
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.2e-12 77.8 98 48.0
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.2e-12 77.8 98 48.0
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.2e-12 77.8 98 48.0
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 1.6e-12 77.4 77 57.1
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.8e-12 76.6 97 47.4
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.8e-12 76.6 92 51.1
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 2.8e-12 76.6 97 46.4
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 4.7e-12 75.9 92 50.0
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 4.7e-12 75.9 97 47.4
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 4.7e-12 75.9 92 50.0
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 8.0e-12 75.1 97 47.4
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 8.0e-12 75.1 97 47.4
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 8.0e-12 75.1 79 51.9
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.0e-11 74.7 61 63.9
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-11 74.3 101 42.6
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-11 74.3 97 46.4
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-11 74.3 98 46.9
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.4e-11 74.3 97 46.4
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-11 74.3 96 44.8
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.4e-11 74.3 110 41.8
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 1.8e-11 73.9 95 46.3
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 2.3e-11 73.6 60 63.3
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 3.1e-11 73.2 97 46.4
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 3.1e-11 73.2 91 47.3
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.2e-11 72.4 109 41.3
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.2e-10 71.2 98 43.9
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-10 71.2 94 43.6
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.6e-10 70.1 87 49.4
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.4e-10 69.7 86 50.0
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.4e-10 69.7 86 50.0
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 3.4e-10 69.7 86 50.0
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.4e-10 69.7 99 44.4
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.4e-10 69.7 96 41.7
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.3e-09 65.1 92 45.7
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.1e-08 64.7 75 45.3
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.1e-08 62.8 76 50.0
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.7e-07 60.1 103 43.7
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.7e-06 57.4 60 53.3
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 2.3e-06 57.0 112 34.8
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 6.6e-06 55.5 63 49.2


User provided reference genes

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