Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08519 Striga asiatica HOM05D030373 ORTHO05D030073 4.7e-146 521.2 262 100.0
SGA_v2.0_scaffold37G14714 Striga asiatica HOM05D030373 ORTHO05D030073 1.5e-51 207.2 102 100.0
SGA_v2.0_scaffold94G28430 Striga asiatica HOM05D030373 ORTHO05D030073 3.5e-24 116.3 59 93.2
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 6.0e-08 62.4 38 78.9
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 6.0e-08 62.4 38 78.9
MD11G1076500 Malus domestica HOM05D030373 ORTHO05D030073 7.8e-08 62.0 59 57.6
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 1.3e-07 61.2 38 76.3
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 2.3e-07 60.5 38 78.9
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 2.3e-07 60.5 38 78.9
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 2.3e-07 60.5 38 78.9
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 3.0e-07 60.1 38 78.9
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 3.0e-07 60.1 38 78.9
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 3.0e-07 60.1 38 78.9
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 3.0e-07 60.1 38 78.9
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 3.0e-07 60.1 38 78.9
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 3.0e-07 60.1 38 78.9
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 3.0e-07 60.1 38 78.9
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 3.0e-07 60.1 38 78.9
SHI00111 Sapria himalayana HOM05D003564 ORTHO05D005332 3.0e-07 60.1 38 76.3
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 3.0e-07 60.1 38 78.9
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 3.0e-07 60.1 38 78.9
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 3.9e-07 59.7 38 78.9
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 5.1e-07 59.3 41 73.2
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 5.1e-07 59.3 35 82.9
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 5.1e-07 59.3 38 76.3
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 5.1e-07 59.3 38 76.3
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 6.6e-07 58.9 38 76.3
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 6.6e-07 58.9 38 76.3
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 6.6e-07 58.9 38 73.7
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 6.6e-07 58.9 38 73.7
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 6.6e-07 58.9 38 73.7
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 6.6e-07 58.9 38 76.3
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 6.6e-07 58.9 38 78.9
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 8.7e-07 58.5 38 76.3
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 8.7e-07 58.5 38 76.3
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 8.7e-07 58.5 38 76.3
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 8.7e-07 58.5 38 76.3
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 8.7e-07 58.5 38 76.3
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 8.7e-07 58.5 38 73.7
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 8.7e-07 58.5 38 73.7
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 76.3
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 76.3
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 1.1e-06 58.2 38 73.7
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 73.7
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 76.3
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 76.3
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 76.3
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 76.3
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 76.3
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 71.1
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 71.1
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 71.1
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 71.1
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 76.3
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 71.1
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 76.3
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 71.1
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 1.5e-06 57.8 79 48.1
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 76.3
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 1.5e-06 57.8 38 71.1
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 1.9e-06 57.4 38 73.7
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 1.9e-06 57.4 38 73.7
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 1.9e-06 57.4 38 73.7
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 1.9e-06 57.4 38 73.7
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 1.9e-06 57.4 38 73.7
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 1.9e-06 57.4 38 71.1
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 1.9e-06 57.4 38 73.7
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 1.9e-06 57.4 38 73.7
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 2.5e-06 57.0 38 73.7
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 2.5e-06 57.0 35 77.1
Glyma.08G358766 Glycine max HOM05D003564 ORTHO05D015539 2.5e-06 57.0 38 71.1
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 2.5e-06 57.0 38 73.7
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 2.5e-06 57.0 35 77.1
Atru.chr5.3350 Acer truncatum HOM05D003564 ORTHO05D005332 3.3e-06 56.6 38 73.7
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 3.3e-06 56.6 38 71.1
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 3.3e-06 56.6 38 71.1
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 3.3e-06 56.6 38 73.7
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 3.3e-06 56.6 38 68.4
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 3.3e-06 56.6 38 73.7
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 3.3e-06 56.6 38 76.3
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 3.3e-06 56.6 38 73.7
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 4.3e-06 56.2 38 71.1
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 4.3e-06 56.2 38 71.1
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 4.3e-06 56.2 38 71.1
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 4.3e-06 56.2 38 73.7
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 4.3e-06 56.2 38 71.1
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 4.3e-06 56.2 38 71.1
Cc03_g00640 Coffea canephora HOM05D003564 ORTHO05D005332 5.6e-06 55.8 38 71.1
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 5.6e-06 55.8 38 71.1
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 5.6e-06 55.8 38 71.1
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 5.6e-06 55.8 38 71.1
Thecc.02G173700 Theobroma cacao HOM05D003564 ORTHO05D005332 5.6e-06 55.8 38 71.1
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 5.6e-06 55.8 38 71.1
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 7.3e-06 55.5 38 68.4
CSS0008122 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 7.3e-06 55.5 38 71.1
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 7.3e-06 55.5 38 71.1
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 7.3e-06 55.5 34 76.5
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 7.3e-06 55.5 38 71.1
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 7.3e-06 55.5 38 71.1
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 9.6e-06 55.1 38 71.1
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 9.6e-06 55.1 38 71.1
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 9.6e-06 55.1 38 71.1


User provided reference genes

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