Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 7.9e-64 246.9 121 100.0
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 9.5e-33 143.7 127 61.4
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.0e-31 140.2 125 57.6
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 3.0e-31 138.7 119 58.8
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 4.0e-31 138.3 125 61.6
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 8.9e-31 137.1 122 59.8
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.7e-29 132.9 124 58.9
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.8e-28 129.4 116 55.2
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 2.4e-28 129.0 125 55.2
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 2.0e-27 125.9 125 52.0
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 2.7e-27 125.6 125 52.8
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.5e-27 125.2 118 55.9
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.9e-26 121.7 121 53.7
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 8.6e-26 120.6 126 52.4
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.1e-25 120.2 124 50.8
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.1e-25 120.2 134 55.2
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.1e-25 120.2 121 56.2
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.5e-25 119.8 123 52.0
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.5e-25 119.8 125 56.8
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.5e-25 119.8 117 56.4
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.5e-25 119.0 123 51.2
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.5e-25 119.0 120 51.7
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.5e-25 119.0 125 52.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.3e-25 118.6 127 53.5
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.3e-25 118.6 120 54.2
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.3e-25 118.2 128 50.0
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 7.3e-25 117.5 124 50.8
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 9.5e-25 117.1 128 51.6
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.2e-24 116.7 126 50.8
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.6e-24 116.3 120 52.5
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 2.1e-24 115.9 126 50.0
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 8.0e-24 114.0 116 53.4
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 8.0e-24 114.0 118 53.4
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 8.0e-24 114.0 124 50.8
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.0e-23 113.6 124 54.0
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 1.0e-23 113.6 124 51.6
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.0e-23 113.6 121 54.5
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-23 113.2 125 51.2
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.3e-23 112.5 124 53.2
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.3e-23 112.5 116 51.7
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 3.1e-23 112.1 134 49.3
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 4.0e-23 111.7 121 54.5
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.0e-23 111.7 119 52.9
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 5.2e-23 111.3 128 52.3
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 5.2e-23 111.3 129 48.1
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 6.8e-23 110.9 127 51.2
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 6.8e-23 110.9 133 48.1
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.2e-22 110.2 120 48.3
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 1.2e-22 110.2 124 52.4
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.2e-22 110.2 125 48.0
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.0e-22 109.4 128 47.7
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.0e-22 109.4 124 52.4
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.6e-22 109.0 117 50.4
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 3.4e-22 108.6 125 50.4
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 4.4e-22 108.2 128 52.3
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 4.4e-22 108.2 117 49.6
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.8e-22 107.8 127 50.4
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 7.5e-22 107.5 118 51.7
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 9.8e-22 107.1 135 46.7
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 9.8e-22 107.1 85 60.0
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.3e-21 106.7 133 47.4
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.7e-21 106.3 124 48.4
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 2.9e-21 105.5 124 47.6
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 3.7e-21 105.1 125 48.8
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 4.9e-21 104.8 121 47.1
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 6.4e-21 104.4 126 47.6
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 8.3e-21 104.0 127 50.4
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.1e-20 103.6 84 60.7
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.1e-20 103.6 121 48.8
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.1e-20 103.6 125 47.2
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.4e-20 103.2 132 47.7
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.4e-20 103.2 93 58.1
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.9e-20 102.8 126 49.2
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 2.4e-20 102.4 126 49.2
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 3.2e-20 102.1 92 57.6
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 3.2e-20 102.1 92 57.6
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.2e-20 102.1 126 50.0
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.2e-20 102.1 126 50.0
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.2e-20 102.1 124 46.8
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 4.1e-20 101.7 126 50.0
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 5.4e-20 101.3 84 58.3
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.4e-20 101.3 116 49.1
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.6e-19 99.8 117 47.0
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 1.6e-19 99.8 129 48.8
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 2.0e-19 99.4 133 46.6
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.7e-19 99.0 126 46.8
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 3.5e-19 98.6 128 42.2
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 4.6e-19 98.2 126 46.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.6e-19 98.2 129 43.4
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.3e-18 96.7 162 38.9
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.3e-18 96.7 132 47.7
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.3e-18 96.7 124 46.0
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.3e-18 96.7 119 47.9
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.3e-18 95.9 91 51.6
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.3e-18 95.9 118 48.3
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 3.0e-18 95.5 130 40.8
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 3.0e-18 95.5 132 45.5
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.9e-18 95.1 116 42.2
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.0e-18 94.7 123 47.2
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 8.6e-18 94.0 134 42.5
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 1.1e-17 93.6 136 46.3
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.5e-17 93.2 125 44.8
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.5e-17 93.2 126 47.6
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 3.3e-17 92.0 125 46.4
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 4.3e-17 91.7 86 54.7
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.3e-17 91.7 117 43.6
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.3e-17 91.7 129 45.0
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 4.3e-17 91.7 132 43.2
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-17 90.9 128 43.0
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-17 90.9 128 43.0
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-17 90.9 128 43.0
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-17 90.9 128 43.0
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 7.3e-17 90.9 110 48.2
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.3e-17 90.9 117 47.9
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.2e-16 90.1 126 42.1
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.2e-16 90.1 119 44.5
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.6e-16 89.7 91 51.6
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.6e-16 89.7 91 51.6
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 2.1e-16 89.4 136 45.6
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 2.1e-16 89.4 133 45.1
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 6.2e-16 87.8 127 45.7
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.2e-16 87.8 117 44.4
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 6.2e-16 87.8 122 45.9
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 8.1e-16 87.4 112 42.0
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 8.1e-16 87.4 127 45.7
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 8.1e-16 87.4 79 54.4
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 8.1e-16 87.4 102 48.0
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.4e-15 86.7 113 43.4
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.1e-15 85.5 102 49.0
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 4.0e-15 85.1 115 42.6
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 4.0e-15 85.1 128 45.3
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 4.0e-15 85.1 122 42.6
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 6.8e-15 84.3 123 42.3
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 8.9e-15 84.0 107 46.7
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.0e-14 82.8 89 52.8
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.6e-14 82.4 109 43.1
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 2.6e-14 82.4 118 43.2
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 2.6e-14 82.4 118 43.2
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.6e-14 82.4 118 41.5
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 2.6e-14 82.4 112 39.3
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 3.4e-14 82.0 118 40.7
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 4.4e-14 81.6 113 40.7
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 5.8e-14 81.3 89 44.9
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 5.8e-14 81.3 129 45.7
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 5.8e-14 81.3 123 44.7
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 9.8e-14 80.5 82 46.3
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 1.3e-13 80.1 118 42.4
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.7e-13 79.7 88 51.1
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 2.2e-13 79.3 80 46.2
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 2.2e-13 79.3 118 44.1
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 2.2e-13 79.3 127 40.2
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 3.7e-13 78.6 89 49.4
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 3.7e-13 78.6 121 42.1
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 4.9e-13 78.2 121 39.7
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.9e-13 78.2 116 41.4
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 6.4e-13 77.8 118 40.7
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 6.4e-13 77.8 113 38.9
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.1e-12 77.0 80 48.8
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.1e-12 77.0 87 47.1
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.9e-12 76.3 90 44.4
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.9e-12 76.3 95 44.2
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 4.1e-12 75.1 102 45.1
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 5.4e-12 74.7 127 37.8
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 5.4e-12 74.7 127 37.8
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 7.1e-12 74.3 90 45.6
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 7.1e-12 74.3 90 45.6
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 7.1e-12 74.3 79 45.6
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.1e-11 72.8 106 41.5
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.1e-11 72.8 81 46.9
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 2.7e-11 72.4 120 38.3
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.7e-11 72.4 127 39.4
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.6e-11 71.6 125 38.4
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 4.6e-11 71.6 113 40.7
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.0e-11 71.2 83 44.6
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.3e-10 70.1 79 50.6
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.3e-10 69.3 115 39.1
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.9e-10 68.6 126 36.5
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.9e-10 68.6 115 39.1
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 9.5e-09 63.9 87 43.7
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 1.2e-08 63.5 101 42.6
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.8e-08 62.4 85 43.5
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 3.6e-08 62.0 82 40.2
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-07 60.5 56 48.2
Lsat_1_v5_gn_0_9440 Lactuca sativa HOM05D003592 ORTHO05D029303 1.1e-07 60.5 82 37.8
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.4e-07 60.1 87 43.7
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.4e-07 60.1 83 39.8
ECA232G3842 Erigeron canadensis HOM05D003592 ORTHO05D029303 2.3e-07 59.3 92 35.9


User provided reference genes

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