Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 1.3e-131 473.0 224 100.0
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 7.3e-79 297.7 168 82.7
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 4.9e-67 258.5 143 82.5
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.1e-66 257.3 146 78.1
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.9e-66 256.5 145 79.3
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 2.4e-66 256.1 143 79.7
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 4.1e-66 255.4 143 79.7
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 4.1e-66 255.4 146 76.7
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 7.1e-66 254.6 145 79.3
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.6e-65 253.4 143 79.0
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 4.6e-65 251.9 143 78.3
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.3e-64 249.6 143 77.6
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 2.3e-64 249.6 145 75.9
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 2.3e-64 249.6 145 75.9
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.0e-64 249.2 146 78.8
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 3.0e-64 249.2 147 78.9
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 3.0e-64 249.2 143 77.6
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 3.0e-64 249.2 145 75.9
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 5.1e-64 248.4 143 76.9
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.5e-63 246.9 143 76.9
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.5e-63 246.9 145 77.9
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.5e-63 246.9 188 61.7
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 1.5e-63 246.9 145 74.5
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.9e-63 246.5 143 76.2
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 4.3e-63 245.4 145 75.2
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 7.3e-63 244.6 145 75.2
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 7.3e-63 244.6 144 75.7
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 9.5e-63 244.2 144 76.4
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 2.1e-62 243.0 144 77.1
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 2.8e-62 242.7 146 74.0
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 2.8e-62 242.7 146 74.7
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 3.6e-62 242.3 143 74.8
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 8.1e-62 241.1 150 74.0
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.4e-61 240.4 143 74.8
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.4e-61 240.4 146 75.3
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.4e-61 240.4 146 75.3
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.4e-61 240.4 147 75.5
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.8e-61 240.0 143 74.8
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.3e-61 239.6 144 73.6
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.3e-61 239.6 144 73.6
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 2.3e-61 239.6 145 73.8
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.3e-61 239.6 145 75.9
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 4.0e-61 238.8 143 75.5
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 4.0e-61 238.8 143 75.5
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 5.2e-61 238.4 143 74.1
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 5.2e-61 238.4 143 75.5
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 6.8e-61 238.0 145 74.5
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 6.8e-61 238.0 144 73.6
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 6.8e-61 238.0 145 74.5
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 6.8e-61 238.0 147 75.5
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 8.9e-61 237.7 145 75.9
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 1.2e-60 237.3 143 73.4
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.5e-60 236.9 136 77.2
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 2.6e-60 236.1 143 76.2
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 5.8e-60 235.0 143 73.4
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 7.6e-60 234.6 145 74.5
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 7.6e-60 234.6 143 72.7
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 9.9e-60 234.2 139 75.5
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.3e-59 233.8 145 75.2
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.7e-59 233.4 144 73.6
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.2e-59 233.0 143 72.0
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 4.9e-59 231.9 144 74.3
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.4e-58 230.3 143 71.3
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.4e-58 230.3 143 72.7
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.9e-58 229.9 143 72.7
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.9e-58 229.9 143 72.7
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 2.4e-58 229.6 145 71.7
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 4.1e-58 228.8 145 69.7
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 4.1e-58 228.8 145 68.3
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 4.1e-58 228.8 144 72.9
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.4e-58 228.4 143 72.7
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 7.1e-58 228.0 145 70.3
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 7.1e-58 228.0 143 69.2
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 7.1e-58 228.0 145 70.3
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 9.2e-58 227.6 143 69.9
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.2e-57 227.3 145 69.7
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.2e-57 227.3 143 72.0
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.2e-57 227.3 143 71.3
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.2e-57 227.3 143 72.0
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.6e-57 226.9 143 69.2
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 2.1e-57 226.5 147 72.1
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.1e-57 226.5 145 73.1
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.1e-57 226.5 143 72.0
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.7e-57 226.1 143 70.6
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.7e-57 226.1 146 71.9
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 3.5e-57 225.7 164 64.6
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.6e-57 225.3 145 69.7
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 7.8e-57 224.6 145 69.0
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 7.8e-57 224.6 146 71.9
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.8e-57 224.6 132 75.8
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.3e-56 223.8 146 69.9
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.7e-56 223.4 146 70.5
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.3e-56 223.0 130 76.2
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.3e-56 223.0 132 75.0
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.3e-56 223.0 132 75.0
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 3.0e-56 222.6 145 68.3
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 3.0e-56 222.6 145 69.7
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 3.9e-56 222.2 143 67.8
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 5.1e-56 221.9 146 69.2
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-55 220.7 145 68.3
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.1e-55 220.7 144 70.8
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.5e-55 220.3 145 69.0
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.5e-55 220.3 147 71.4
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.9e-55 219.9 143 67.1
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 4.3e-55 218.8 146 69.9
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 5.6e-55 218.4 144 70.1
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.6e-55 218.4 140 71.4
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 9.6e-55 217.6 147 70.1
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 2.1e-54 216.5 145 70.3
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.1e-53 214.2 143 68.5
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.4e-53 213.8 146 71.9
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-52 210.7 146 68.5
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 1.2e-52 210.7 146 68.5
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.5e-52 210.3 147 69.4
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 2.0e-52 209.9 146 69.2
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 2.0e-52 209.9 146 69.2
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 3.4e-52 209.1 149 68.5
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 7.6e-52 208.0 132 72.0
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 2.2e-51 206.5 147 68.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 2.2e-51 206.5 147 68.0
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 8.4e-51 204.5 143 67.8
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.1e-50 204.1 144 66.7
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.1e-50 204.1 125 70.4
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.4e-50 203.8 130 70.8
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 1.4e-50 203.8 130 68.5
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.9e-50 203.4 144 65.3
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.4e-50 203.0 118 75.4
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 5.4e-50 201.8 153 68.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 9.3e-50 201.1 150 63.3
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.6e-49 200.3 147 67.3
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.6e-49 200.3 147 67.3
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.6e-49 200.3 147 67.3
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 4.6e-49 198.7 145 66.9
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 4.6e-49 198.7 145 66.9
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 4.6e-49 198.7 145 66.9
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.7e-48 196.8 147 66.0
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 3.0e-48 196.1 147 66.0
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 3.0e-48 196.1 147 65.3
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 3.9e-48 195.7 123 73.2
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 2.5e-47 193.0 134 69.4
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 4.3e-47 192.2 143 66.4
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 2.1e-46 189.9 143 65.0
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 2.7e-41 172.9 143 59.4
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 8.7e-40 167.9 145 57.9
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 6.9e-37 158.3 143 58.7
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 8.4e-35 151.4 98 69.4
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.9e-34 150.2 94 75.5
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 5.5e-34 148.7 100 68.0
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 3.9e-32 142.5 154 50.0
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 6.7e-32 141.7 136 53.7
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 4.6e-25 119.0 147 46.9
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.3e-22 110.9 127 47.2
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.0e-19 101.3 67 68.7
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 6.5e-19 98.6 89 52.8
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.7e-17 93.2 72 61.1
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 5.9e-12 75.5 39 82.1
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 2.1e-09 67.0 53 45.3
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 1.7e-06 57.4 66 39.4


User provided reference genes

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