Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 3.5e-269 931.0 462 100.0
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 5.3e-209 731.1 429 82.3
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 4.6e-205 718.0 452 76.3
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 6.7e-204 714.1 446 77.4
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.1e-203 713.4 447 76.5
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.7e-202 709.5 463 74.1
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 2.9e-199 698.7 473 72.5
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.8e-196 689.5 452 75.4
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.1e-195 686.8 451 75.8
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 9.1e-193 677.2 455 73.4
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 1.2e-192 676.8 440 73.9
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.5e-192 674.9 452 73.7
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 3.8e-191 671.8 462 71.6
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.8e-191 671.8 447 74.0
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.1e-190 670.2 457 72.6
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 1.1e-190 670.2 436 73.6
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.5e-190 669.8 454 73.6
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.2e-190 668.3 452 73.0
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 2.1e-189 666.0 450 72.0
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.1e-189 666.0 452 72.8
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 4.7e-189 664.8 442 73.3
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 8.0e-189 664.1 457 71.8
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 1.4e-188 663.3 451 71.8
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 3.0e-188 662.1 455 71.0
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 4.0e-188 661.8 455 71.0
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 8.8e-188 660.6 447 72.0
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.1e-187 660.2 443 73.1
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.0e-187 659.4 458 71.4
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.0e-187 659.4 451 71.8
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 2.0e-187 659.4 447 71.8
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 3.3e-187 658.7 446 72.4
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.7e-186 656.4 447 71.4
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 2.2e-186 656.0 454 71.4
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.8e-186 655.6 451 71.6
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.8e-186 655.6 454 70.9
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 6.3e-186 654.4 457 70.7
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 8.2e-186 654.1 451 70.5
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 3.1e-185 652.1 443 72.0
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 4.1e-185 651.7 451 70.1
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 5.3e-185 651.4 451 71.2
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 7.0e-185 651.0 451 71.0
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 7.0e-185 651.0 461 69.4
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 9.1e-185 650.6 453 71.1
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 9.1e-185 650.6 447 70.9
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.6e-184 649.8 452 69.0
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 1.6e-184 649.8 457 69.8
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.0e-184 649.4 459 69.5
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.7e-184 649.0 446 70.2
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 3.5e-184 648.7 446 70.9
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 5.9e-184 647.9 463 70.2
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.9e-184 647.9 427 72.8
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.0e-183 647.1 456 69.7
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.7e-183 646.4 456 70.0
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.7e-183 646.4 448 71.0
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 2.9e-183 645.6 464 68.1
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.9e-183 645.6 427 72.4
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.9e-183 645.6 427 72.4
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 6.5e-183 644.4 438 71.7
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.1e-182 643.7 455 69.0
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.9e-182 642.9 454 68.9
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 5.5e-182 641.3 448 70.8
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 5.5e-182 641.3 444 70.0
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 5.5e-182 641.3 461 68.5
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 5.5e-182 641.3 455 69.0
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 5.5e-182 641.3 424 71.7
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 2.7e-181 639.0 444 70.0
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.7e-181 639.0 444 70.3
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.7e-181 639.0 444 70.3
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.0e-181 637.5 456 68.2
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.4e-180 636.7 433 70.9
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.4e-180 636.7 450 68.9
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.8e-180 636.3 431 71.2
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.3e-180 636.0 450 69.3
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.0e-180 635.6 456 68.2
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 6.8e-180 634.4 431 71.5
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.2e-179 633.6 444 69.4
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.2e-179 633.6 444 69.4
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 1.5e-179 633.3 432 70.6
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 2.6e-179 632.5 448 69.6
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.6e-179 632.5 448 69.2
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 2.6e-179 632.5 437 70.7
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 4.4e-179 631.7 448 69.2
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 5.7e-179 631.3 474 67.3
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 7.5e-179 630.9 427 70.3
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 7.5e-179 630.9 457 68.1
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 2.8e-178 629.0 448 68.1
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 4.8e-178 628.2 461 66.6
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 8.3e-178 627.5 446 67.9
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.1e-177 627.1 436 69.0
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.8e-177 626.3 444 69.1
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.2e-176 623.6 454 66.7
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.7e-176 622.5 445 69.0
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.7e-176 622.5 438 68.7
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 4.5e-176 621.7 435 68.5
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.0e-175 620.5 424 69.6
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.2e-175 619.4 449 67.5
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.2e-175 619.4 466 64.8
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 3.8e-175 618.6 429 68.5
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 6.5e-175 617.8 435 67.1
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.1e-174 617.1 429 68.3
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.1e-174 617.1 429 68.3
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.5e-174 616.7 461 67.0
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 7.2e-174 614.4 451 67.8
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 9.4e-174 614.0 411 73.2
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.6e-173 613.2 430 67.7
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 1.6e-173 613.2 446 66.8
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.8e-172 609.8 443 65.9
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 2.3e-172 609.4 443 66.1
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 2.3e-172 609.4 423 68.6
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 4.0e-172 608.6 431 67.3
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 4.0e-172 608.6 443 65.9
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 8.8e-172 607.4 459 64.7
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 4.4e-171 605.1 470 64.0
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 5.7e-171 604.7 436 67.2
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 7.5e-171 604.4 458 62.9
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.3e-170 603.6 437 66.8
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.7e-170 603.2 458 64.2
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.8e-170 602.4 448 65.0
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.7e-170 602.1 462 65.6
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 8.3e-170 600.9 448 64.7
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 8.3e-170 600.9 458 64.6
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.7e-168 595.9 457 63.5
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 3.5e-168 595.5 443 66.1
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 4.5e-168 595.1 422 68.2
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.1e-166 590.5 404 71.3
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 2.5e-166 589.3 440 65.5
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 4.3e-166 588.6 404 70.5
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 5.6e-166 588.2 449 64.8
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 9.5e-166 587.4 448 64.3
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.6e-165 586.6 450 62.4
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.6e-165 586.6 438 63.2
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 3.6e-165 585.5 459 62.7
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.4e-163 578.9 412 68.2
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.7e-162 575.5 423 67.4
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 2.4e-161 572.8 431 64.0
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 3.0e-159 565.8 391 70.3
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 3.9e-159 565.5 384 69.8
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.3e-158 562.4 462 62.3
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 7.3e-158 561.2 389 70.7
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 7.5e-155 551.2 387 69.3
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.3e-154 547.7 365 70.7
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.1e-150 537.3 364 70.6
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.1e-143 511.9 434 59.2
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.3e-140 503.1 429 60.1
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 4.0e-140 502.3 368 66.8
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-138 497.3 435 57.5
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 6.0e-136 488.4 420 57.4
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.6e-133 480.3 418 57.7
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.1e-132 476.1 462 56.7
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 5.1e-127 458.8 282 75.9
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.4e-124 449.9 445 53.3
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.3e-114 417.5 318 64.5
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 2.1e-109 400.2 450 48.2
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 2.4e-100 370.2 426 44.4
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 6.9e-100 368.6 273 63.7
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 2.6e-99 366.7 239 74.1
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 7.2e-89 332.0 230 68.7
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.1e-88 330.5 424 42.7
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 3.0e-87 326.6 380 43.9
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 9.1e-68 261.9 279 53.0
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 1.2e-59 235.0 165 70.9
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 4.5e-59 233.0 156 70.5
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.5e-41 174.9 113 73.5
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.2e-40 169.5 127 64.6
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 6.4e-37 159.5 429 28.7
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-36 158.3 92 79.3
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 3.4e-30 137.1 450 27.8
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 7.6e-22 109.4 75 70.7
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.1e-19 101.3 95 51.6
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 3.8e-13 80.5 63 55.6
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.2e-11 75.5 79 51.9
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.8e-08 64.3 199 27.6
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 4.8e-08 63.5 312 27.9
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 6.2e-08 63.2 377 24.4


User provided reference genes

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