Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.1e-162 576.6 301 100.0
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 5.1e-112 408.3 282 74.8
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.9e-111 406.4 288 74.0
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 4.3e-111 405.2 293 73.7
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 3.8e-107 392.1 288 72.9
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 9.1e-101 370.9 287 69.0
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 9.7e-95 350.9 287 63.1
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 1.8e-93 346.7 282 63.8
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.5e-90 337.0 284 63.7
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 5.5e-90 335.1 284 63.7
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 1.6e-89 333.6 284 64.8
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 2.7e-89 332.8 305 63.0
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 8.0e-89 331.3 284 63.0
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.8e-88 330.1 284 63.7
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.0e-88 328.9 284 64.1
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 1.5e-87 327.0 238 69.3
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 9.7e-87 324.3 277 60.6
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 4.8e-86 322.0 282 62.4
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 6.5e-83 311.6 211 74.4
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 9.4e-82 307.8 275 60.4
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 8.0e-81 304.7 284 59.5
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 2.0e-79 300.1 279 60.9
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 5.7e-79 298.5 211 70.6
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 2.4e-77 293.1 285 56.8
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 7.7e-76 288.1 276 58.3
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 2.3e-75 286.6 276 58.3
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 8.6e-75 284.6 284 55.6
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 5.5e-74 282.0 224 65.6
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 7.2e-74 281.6 282 57.1
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 7.2e-74 281.6 202 68.3
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.2e-73 280.8 282 56.7
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 4.7e-73 278.9 279 54.8
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 4.7e-73 278.9 285 55.1
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 8.0e-73 278.1 205 68.3
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.0e-72 277.7 281 56.6
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.0e-72 277.7 282 55.7
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 1.8e-72 276.9 276 57.2
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.8e-72 276.9 282 56.7
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 1.8e-72 276.9 281 56.2
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 3.0e-72 276.2 277 55.2
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 6.8e-72 275.0 283 54.4
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 6.8e-72 275.0 282 55.0
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 8.9e-72 274.6 283 57.2
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 1.2e-71 274.2 281 55.9
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 2.6e-71 273.1 280 57.5
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 3.4e-71 272.7 286 56.6
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 3.4e-71 272.7 335 50.7
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 4.4e-71 272.3 277 57.4
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 5.7e-71 271.9 215 65.1
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 9.8e-71 271.2 287 55.4
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 9.8e-71 271.2 277 56.0
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 9.8e-71 271.2 275 54.5
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.3e-70 270.8 288 54.9
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 1.7e-70 270.4 282 54.6
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 2.2e-70 270.0 216 64.4
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.2e-70 270.0 275 56.7
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 2.8e-70 269.6 209 64.1
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.8e-70 269.6 277 55.6
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 2.8e-70 269.6 287 53.0
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 3.7e-70 269.2 287 54.7
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 3.7e-70 269.2 285 55.8
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 3.7e-70 269.2 307 52.8
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 8.3e-70 268.1 212 63.2
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 8.3e-70 268.1 206 65.5
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 8.3e-70 268.1 285 54.0
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.1e-69 267.7 282 55.3
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 1.1e-69 267.7 281 55.2
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.4e-69 267.3 281 55.2
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.8e-69 266.9 287 53.3
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 1.8e-69 266.9 271 57.2
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 3.1e-69 266.2 280 54.3
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 3.1e-69 266.2 209 62.7
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 7.0e-69 265.0 283 50.5
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 9.2e-69 264.6 283 53.7
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 9.2e-69 264.6 205 64.9
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 1.6e-68 263.8 286 53.5
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.6e-68 263.8 288 54.5
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.5e-68 262.3 284 52.1
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 1.0e-67 261.2 241 61.8
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.3e-67 260.8 286 52.8
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.7e-67 260.4 221 61.5
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 2.3e-67 260.0 287 52.6
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 2.3e-67 260.0 285 53.3
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 2.3e-67 260.0 285 53.7
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 2.9e-67 259.6 259 54.4
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 5.0e-67 258.8 211 63.5
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 6.6e-67 258.5 277 55.2
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 8.6e-67 258.1 210 63.3
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 8.6e-67 258.1 281 54.8
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.1e-66 257.7 286 52.4
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.1e-66 257.7 286 52.4
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.1e-66 257.7 282 52.8
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.1e-66 257.7 284 51.8
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 7.3e-66 255.0 284 52.1
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 9.5e-66 254.6 283 53.0
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 2.1e-65 253.4 286 51.7
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.1e-65 253.4 279 52.3
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 2.8e-65 253.1 245 59.2
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 4.7e-65 252.3 274 49.3
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 1.4e-64 250.8 271 54.2
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.3e-64 250.0 222 59.0
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 3.0e-64 249.6 282 53.2
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.7e-62 243.8 224 57.1
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 1.7e-62 243.8 288 50.0
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 4.9e-62 242.3 294 50.3
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 8.3e-62 241.5 210 60.5
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 8.3e-62 241.5 210 60.5
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.4e-61 240.7 218 57.8
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.4e-61 240.7 218 57.8
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.2e-60 237.7 212 56.6
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 6.6e-51 205.3 210 52.9
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 4.3e-50 202.6 209 53.6
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.6e-49 200.7 216 53.2
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 7.1e-45 185.3 200 46.5
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 2.5e-42 176.8 168 57.7
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 6.8e-40 168.7 178 50.0
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 1.3e-38 164.5 227 46.7
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 2.2e-38 163.7 234 45.7
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 5.4e-37 159.1 219 40.6
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 4.6e-36 156.0 218 41.3
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.3e-35 154.5 238 38.7
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.6e-34 149.1 220 40.0
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 9.0e-32 141.7 174 46.0
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 1.7e-30 137.5 130 58.5
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 2.3e-27 127.1 107 62.6
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.4e-24 117.1 115 55.7
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 5.3e-24 115.9 119 54.6
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 7.1e-21 105.5 148 40.5
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 3.0e-19 100.1 51 86.3
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 1.1e-18 98.2 79 60.8
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 4.0e-16 89.7 204 34.3
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 6.9e-16 89.0 178 38.8
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 7.9e-12 75.5 90 44.4
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 3.4e-07 60.1 73 43.8


User provided reference genes

Program Settings