Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 0.0e+00 1820.8 880 100.0
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 0.0e+00 1207.6 884 66.1
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 0.0e+00 1158.7 878 63.9
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.3e-301 1039.6 879 58.8
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.9e-296 1021.1 879 57.9
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 5.4e-279 964.5 879 55.4
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.4e-265 918.7 838 56.3
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.8e-242 843.2 919 48.0
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 2.0e-241 839.7 898 49.7
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 9.4e-239 830.9 1111 42.6
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.0e-237 827.4 894 48.9
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 3.0e-237 825.9 877 48.0
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 1.5e-236 823.5 906 48.7
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 3.7e-235 818.9 891 48.4
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 3.7e-235 818.9 909 47.7
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.0e-232 810.8 882 48.5
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 1.3e-232 810.4 905 47.1
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 3.8e-232 808.9 1116 42.2
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 1.1e-231 807.4 1112 42.3
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 4.5e-225 785.4 928 46.9
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 1.0e-224 784.3 900 46.3
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 2.9e-224 782.7 903 45.8
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 8.5e-224 781.2 907 47.5
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.1e-223 780.8 880 47.4
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 3.2e-223 779.2 886 46.6
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 7.2e-223 778.1 900 46.2
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 2.1e-222 776.5 1121 41.5
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 3.6e-222 775.8 898 46.4
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.0e-221 774.2 867 47.2
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 4.0e-221 772.3 881 47.0
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 3.1e-218 762.7 901 46.1
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 1.2e-217 760.8 898 45.9
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 3.5e-217 759.2 923 45.3
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 3.5e-217 759.2 897 48.4
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.9e-216 756.1 898 45.9
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.2e-214 750.7 923 44.9
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 4.7e-214 748.8 923 43.2
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 2.3e-213 746.5 878 46.8
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 1.7e-211 740.3 884 45.4
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 8.3e-211 738.0 931 42.7
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.0e-208 731.1 1102 38.5
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.1e-207 727.6 778 48.7
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.8e-205 720.3 885 43.8
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 2.0e-204 716.8 1097 38.6
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 2.0e-204 716.8 868 46.5
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 2.0e-204 716.8 883 43.9
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 4.9e-203 712.2 892 42.7
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 2.7e-201 706.4 811 47.1
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 3.5e-201 706.1 887 43.9
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 2.3e-200 703.4 891 43.8
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 2.5e-199 699.9 916 41.0
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 4.3e-199 699.1 910 41.1
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 4.7e-198 695.7 908 41.6
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 6.1e-198 695.3 908 41.6
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 6.1e-198 695.3 888 42.8
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 6.8e-197 691.8 882 42.9
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 2.0e-196 690.3 886 43.5
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 3.4e-196 689.5 904 41.5
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 8.3e-195 684.9 889 42.6
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 1.4e-194 684.1 878 43.1
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 4.1e-194 682.6 909 40.6
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 5.4e-194 682.2 904 41.2
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 9.2e-194 681.4 892 42.2
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 7.8e-193 678.3 888 42.1
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 3.9e-192 676.0 896 40.6
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 1.9e-191 673.7 886 43.5
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.1e-189 667.9 876 42.1
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 3.1e-189 666.4 847 43.6
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 8.9e-189 664.8 923 40.5
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 2.0e-188 663.7 890 42.9
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 9.8e-188 661.4 908 39.4
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 2.9e-187 659.8 1060 38.7
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.4e-186 657.5 903 39.5
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 6.0e-185 652.1 756 46.7
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 1.5e-183 647.5 903 41.0
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 4.3e-183 646.0 906 40.9
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 3.1e-181 639.8 798 43.2
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 1.7e-176 624.0 1082 36.1
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 5.6e-175 619.0 624 50.5
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 6.8e-173 612.1 785 42.7
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 8.4e-171 605.1 1060 35.9
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 7.1e-170 602.1 892 39.2
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 5.2e-165 585.9 644 47.5
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 9.9e-164 581.6 913 38.0
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 1.1e-162 578.2 921 38.4
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 1.9e-159 567.4 968 35.0
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.6e-158 563.1 835 39.3
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.2e-155 553.9 780 40.4
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 7.1e-154 548.9 1119 33.2
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.2e-153 548.1 1026 34.2
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 4.6e-153 546.2 483 56.1
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.3e-142 511.5 668 41.5
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 3.8e-139 500.0 962 34.5
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 5.7e-135 486.1 506 48.0
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 3.2e-130 470.3 494 49.8
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 1.4e-128 464.9 707 39.6
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 8.8e-128 462.2 554 43.9
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.6e-121 440.3 600 41.5
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 7.9e-121 439.1 627 39.9
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 8.2e-118 429.1 965 31.5
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 4.7e-113 413.3 952 32.4
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 4.1e-109 400.2 552 41.3
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 4.5e-108 396.7 949 31.4
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 1.3e-102 378.6 937 30.5
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 2.1e-97 361.3 596 35.6
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 1.7e-94 351.7 1197 25.1
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 3.5e-84 317.4 361 46.8
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 8.9e-80 302.8 476 38.7
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 7.5e-79 299.7 382 42.7
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 1.3e-78 298.9 419 41.1
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 3.5e-76 290.8 677 33.1
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 1.6e-68 265.4 935 26.3
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.1e-66 259.2 266 51.9
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 2.0e-63 248.4 300 47.7
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 3.5e-60 237.7 206 57.8
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 2.2e-54 218.4 370 37.6
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 2.3e-51 208.4 161 64.0
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 1.1e-48 199.5 206 50.5
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.5e-47 195.7 202 51.5
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 2.0e-47 195.3 301 38.9
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 6.4e-46 190.3 192 51.6
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 3.0e-43 181.4 371 32.9
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.6e-41 175.6 203 47.3
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.6e-41 175.6 264 38.3
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.6e-41 174.5 274 37.6
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 1.0e-35 156.4 746 22.8
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 3.1e-32 144.8 340 29.4
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 6.2e-25 120.6 143 43.4
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 6.9e-24 117.1 88 60.2
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 1.2e-23 116.3 111 54.1
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 2.0e-23 115.5 193 34.2
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.9e-22 111.7 113 50.4
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 2.7e-12 78.6 113 39.8
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 4.6e-12 77.8 85 47.1
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 2.5e-10 72.0 158 33.5


User provided reference genes

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