Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 7.5e-161 570.5 291 100.0
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 1.1e-138 496.9 318 83.6
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 5.0e-104 381.7 302 67.5
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 3.6e-102 375.6 301 69.1
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 2.4e-82 309.7 300 60.0
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 1.4e-77 293.9 297 58.2
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 2.5e-71 273.1 231 63.6
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 2.8e-70 269.6 195 68.2
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 2.8e-70 269.6 292 55.1
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 6.1e-70 268.5 230 62.6
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 8.0e-70 268.1 200 67.0
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 1.0e-69 267.7 231 62.8
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 1.0e-69 267.7 200 66.5
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 3.0e-69 266.2 204 64.2
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 3.0e-69 266.2 249 57.8
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 5.2e-69 265.4 292 52.4
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 2.6e-68 263.1 291 52.6
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 5.7e-68 261.9 205 63.4
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 7.5e-68 261.5 298 51.7
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 2.8e-67 259.6 206 65.5
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 8.3e-67 258.1 298 51.3
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 2.4e-66 256.5 307 51.1
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 2.4e-66 256.5 200 65.0
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 3.2e-66 256.1 291 52.2
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 5.4e-66 255.4 233 55.8
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 5.4e-66 255.4 204 61.8
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 1.2e-65 254.2 205 62.4
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 1.2e-65 254.2 204 62.3
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 1.6e-65 253.8 204 60.3
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 2.0e-65 253.4 241 57.7
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 2.7e-65 253.1 215 60.5
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 5.9e-65 251.9 206 64.1
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 7.8e-65 251.5 291 50.5
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 1.3e-64 250.8 291 51.9
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 2.9e-64 249.6 203 61.6
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 3.9e-64 249.2 203 62.1
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 5.0e-64 248.8 267 51.7
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 1.9e-63 246.9 292 51.4
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 2.5e-63 246.5 208 61.5
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 2.5e-63 246.5 199 61.8
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 3.3e-63 246.1 204 62.7
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 3.3e-63 246.1 218 60.1
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 4.3e-63 245.7 207 61.8
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 5.6e-63 245.4 193 64.2
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 7.3e-63 245.0 204 62.7
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 7.3e-63 245.0 291 49.8
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 9.5e-63 244.6 203 62.6
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 1.2e-62 244.2 204 59.3
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 1.2e-62 244.2 204 62.7
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 1.2e-62 244.2 256 53.5
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 1.6e-62 243.8 206 60.2
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 1.6e-62 243.8 203 60.1
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 3.6e-62 242.7 291 49.5
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 4.7e-62 242.3 245 55.9
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 4.7e-62 242.3 178 66.9
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 8.0e-62 241.5 204 58.8
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 1.0e-61 241.1 203 59.6
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 1.0e-61 241.1 290 50.7
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.4e-61 240.7 205 60.5
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 1.8e-61 240.4 204 59.8
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 8.9e-61 238.0 204 59.3
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 1.2e-60 237.7 207 59.9
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 1.5e-60 237.3 231 54.1
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 1.5e-60 237.3 214 56.5
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 2.0e-60 236.9 226 56.2
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 3.4e-60 236.1 276 48.2
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 3.4e-60 236.1 206 58.3
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 4.4e-60 235.7 294 47.3
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 7.5e-60 235.0 206 58.7
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 7.5e-60 235.0 205 58.0
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 9.8e-60 234.6 193 61.7
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 9.8e-60 234.6 223 56.5
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 2.2e-59 233.4 206 57.3
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 2.9e-59 233.0 298 49.0
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 3.7e-59 232.6 206 57.8
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 4.9e-59 232.3 252 50.4
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 8.3e-59 231.5 218 58.7
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 2.4e-58 229.9 205 57.6
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 3.2e-58 229.6 238 54.2
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 4.1e-58 229.2 204 57.4
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 9.2e-58 228.0 251 52.6
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 1.2e-57 227.6 248 49.6
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 2.3e-56 223.4 314 44.6
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 8.6e-56 221.5 223 53.4
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 1.5e-55 220.7 192 58.3
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 2.5e-55 219.9 192 58.9
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 4.3e-55 219.2 192 59.9
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 1.1e-53 214.5 198 55.6
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 3.2e-50 203.0 167 60.5
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 4.1e-50 202.6 152 67.8
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 2.3e-48 196.8 231 48.1
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 3.9e-48 196.1 267 43.4
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 5.1e-48 195.7 160 65.0
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 1.1e-47 194.5 290 45.9
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 3.6e-46 189.5 151 66.2
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 1.4e-45 187.6 167 57.5
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 3.1e-45 186.4 172 56.4
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 3.1e-45 186.4 142 68.3
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 8.9e-45 184.9 204 49.0
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 3.7e-43 179.5 152 59.9
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 4.9e-43 179.1 176 55.1
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 4.1e-42 176.0 126 68.3
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 1.0e-40 171.4 251 39.8
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 1.3e-40 171.0 132 62.1
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 1.6e-38 164.1 211 45.0
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 2.1e-38 163.7 192 49.5
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 3.6e-38 162.9 223 42.6
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 6.2e-38 162.2 196 50.5
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 4.6e-33 146.0 111 65.8
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 2.4e-29 133.7 152 49.3
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 3.1e-29 133.3 203 40.4
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 1.2e-28 131.3 192 40.1
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 2.8e-22 110.2 116 52.6
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 8.1e-22 108.6 80 71.2
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 2.4e-18 97.1 87 52.9
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 3.2e-18 96.7 179 34.1
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 3.2e-18 96.7 179 34.1
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 4.6e-17 92.8 123 36.6
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 5.6e-15 85.9 104 48.1
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 1.4e-13 81.3 161 32.3
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 9.0e-13 78.6 244 29.5
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 2.1e-09 67.4 105 41.9
SalBow1G6520 Salvia bowleyana HOM05D001890 ORTHO05D008163 6.0e-09 65.9 47 72.3
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 2.8e-06 57.0 115 32.2


User provided reference genes

Program Settings