Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 3.9e-282 974.2 496 100.0
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 1.6e-224 782.7 493 80.3
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 2.6e-222 775.4 491 80.4
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 4.5e-222 774.6 491 80.4
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 2.5e-217 758.8 492 77.0
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 3.1e-207 725.3 494 74.9
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 5.3e-207 724.5 494 73.5
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 2.6e-206 722.2 494 73.3
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 2.6e-206 722.2 494 74.1
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 8.5e-205 717.2 493 72.8
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.1e-204 716.8 494 73.3
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.0e-202 710.3 493 73.4
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 1.8e-202 709.5 494 73.3
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 1.8e-202 709.5 494 72.5
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 6.7e-202 707.6 494 73.1
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 8.8e-202 707.2 494 72.7
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 1.5e-201 706.4 494 72.7
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 4.4e-201 704.9 518 69.7
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 7.5e-201 704.1 494 72.1
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 4.8e-200 701.4 495 71.5
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 4.8e-200 701.4 493 71.8
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 6.3e-200 701.0 494 72.3
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 8.2e-200 700.7 495 70.3
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 1.4e-199 699.9 496 70.4
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 1.8e-199 699.5 494 71.5
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 2.4e-199 699.1 495 72.1
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 2.0e-198 696.0 495 69.9
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 2.0e-198 696.0 502 69.9
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 1.3e-197 693.3 502 69.5
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 2.9e-197 692.2 520 68.3
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 8.5e-197 690.6 495 69.3
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 8.5e-197 690.6 495 70.3
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 4.2e-196 688.3 494 71.1
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 1.2e-195 686.8 495 69.9
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 1.8e-194 682.9 511 68.5
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 1.2e-193 680.2 496 70.2
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 3.4e-193 678.7 495 69.5
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 3.4e-193 678.7 496 69.2
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 4.4e-193 678.3 495 69.7
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 5.7e-193 677.9 496 69.2
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 2.8e-192 675.6 495 69.1
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 3.7e-192 675.2 498 67.9
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 1.1e-191 673.7 496 68.5
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 1.1e-191 673.7 496 68.5
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 1.1e-191 673.7 495 70.3
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 1.8e-191 672.9 496 69.6
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 2.4e-191 672.5 496 68.8
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 3.1e-191 672.2 497 69.4
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 4.1e-191 671.8 496 68.5
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 9.1e-191 670.6 495 67.7
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.2e-190 670.2 496 68.5
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 3.5e-190 668.7 495 68.5
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 3.8e-189 665.2 497 68.0
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 5.0e-189 664.8 496 68.5
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 6.5e-189 664.5 428 80.6
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.1e-188 663.7 498 68.5
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 2.5e-188 662.5 496 67.3
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 7.2e-188 661.0 515 66.2
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 9.5e-188 660.6 507 67.5
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.6e-187 659.8 516 66.5
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 2.1e-187 659.4 496 67.9
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 3.6e-187 658.7 496 67.3
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 4.7e-187 658.3 527 65.3
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 4.7e-187 658.3 496 66.7
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 8.0e-187 657.5 496 67.5
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 4.0e-186 655.2 497 68.6
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 6.8e-186 654.4 516 65.5
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 6.8e-186 654.4 496 68.1
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 2.6e-185 652.5 507 65.9
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 1.3e-184 650.2 498 67.1
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 6.3e-184 647.9 494 66.2
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 1.8e-183 646.4 496 68.3
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 4.1e-183 645.2 480 71.0
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 5.4e-183 644.8 495 67.5
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.3e-181 640.2 494 65.4
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 2.9e-181 639.0 498 67.5
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 2.9e-181 639.0 490 67.3
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 8.6e-181 637.5 504 65.5
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 1.2e-179 633.6 500 65.0
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 2.1e-179 632.9 496 64.9
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 1.8e-178 629.8 496 64.9
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 4.0e-178 628.6 495 64.8
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 4.0e-178 628.6 497 64.4
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 1.5e-177 626.7 498 66.5
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 2.0e-177 626.3 498 64.9
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 1.3e-176 623.6 497 64.4
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 1.3e-176 623.6 498 64.3
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 3.7e-176 622.1 496 66.3
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 3.7e-176 622.1 499 64.5
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 6.4e-176 621.3 497 66.6
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 2.4e-175 619.4 505 64.8
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 9.2e-175 617.5 497 63.2
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 2.7e-174 615.9 498 63.7
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 4.6e-174 615.1 497 63.0
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 4.6e-174 615.1 499 63.9
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 1.3e-173 613.6 497 64.2
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 3.9e-173 612.1 498 63.3
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 1.1e-172 610.5 448 68.8
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 5.6e-172 608.2 498 63.1
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 5.6e-172 608.2 499 63.3
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 7.3e-172 607.8 495 64.2
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 3.6e-171 605.5 495 60.4
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 8.0e-171 604.4 498 62.7
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 5.4e-167 591.7 496 61.7
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 1.6e-166 590.1 497 61.0
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 4.6e-166 588.6 495 62.4
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 6.0e-166 588.2 496 61.3
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 7.8e-166 587.8 497 61.0
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 7.8e-166 587.8 497 61.0
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 4.0e-162 575.5 496 61.3
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 3.3e-156 555.8 424 67.5
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.8e-155 552.7 496 57.3
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 1.5e-153 547.0 444 63.7
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 3.8e-152 542.3 396 71.0
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 2.2e-144 516.5 499 55.7
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 6.6e-141 505.0 510 53.5
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 2.2e-136 490.0 359 71.6
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 2.2e-136 490.0 529 51.4
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 2.4e-135 486.5 497 53.5
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 7.4e-132 474.9 504 52.2
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 1.4e-127 460.7 509 50.7
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 2.6e-121 439.9 443 55.1
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 1.4e-119 434.1 348 62.1
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 1.1e-114 417.9 296 73.6
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 1.5e-108 397.5 408 54.7
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 3.1e-106 389.8 494 48.0
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 1.2e-105 387.9 546 45.1
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 9.1e-98 361.7 527 41.9
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 1.7e-80 304.3 507 40.6
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 4.4e-76 289.7 485 40.2
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 1.3e-75 288.1 202 72.3
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 4.8e-75 286.2 219 64.8
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 1.8e-53 214.5 379 40.6
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 7.0e-50 202.6 288 44.1
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 4.1e-42 176.8 147 59.9
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 1.6e-38 164.9 192 53.1
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.5e-31 141.7 294 32.7
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 7.3e-31 139.4 100 66.0
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 8.1e-22 109.4 80 67.5
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 9.0e-21 105.9 188 38.8
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 1.7e-19 101.7 80 60.0
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 5.4e-18 96.7 87 58.6
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 5.4e-18 96.7 77 54.5
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 1.3e-16 92.0 88 60.2
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 9.6e-15 85.9 70 57.1
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 4.0e-13 80.5 204 29.4
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 2.6e-12 77.8 48 68.8
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 5.8e-12 76.6 46 73.9
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 9.3e-10 69.3 63 47.6
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 1.6e-09 68.6 46 69.6


User provided reference genes

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