Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 7.9e-106 387.1 194 100.0
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 9.0e-94 347.1 222 82.4
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 1.9e-51 206.5 119 91.6
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 1.4e-33 147.1 118 65.3
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 6.8e-33 144.8 116 63.8
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.2e-32 144.1 118 64.4
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 6.4e-31 138.3 116 61.2
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.9e-30 136.7 119 60.5
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.9e-30 136.7 119 60.5
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 2.7e-29 132.9 108 57.4
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 6.6e-28 128.3 108 63.0
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 6.6e-28 128.3 110 52.7
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 8.6e-28 127.9 110 60.0
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 2.5e-27 126.3 101 63.4
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 3.3e-27 125.9 109 55.0
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 7.3e-27 124.8 108 56.5
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 7.3e-27 124.8 116 54.3
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 1.2e-26 124.0 118 55.1
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 1.6e-26 123.6 115 55.7
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 2.8e-26 122.9 111 54.1
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 3.6e-26 122.5 119 52.1
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 4.7e-26 122.1 113 55.8
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 6.2e-26 121.7 119 52.1
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 6.2e-26 121.7 115 53.0
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 1.1e-25 120.9 119 53.8
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 1.4e-25 120.6 119 51.3
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.8e-25 120.2 113 52.2
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 1.8e-25 120.2 59 100.0
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 2.3e-25 119.8 111 54.1
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 3.1e-25 119.4 102 54.9
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 4.0e-25 119.0 119 53.8
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 8.9e-25 117.9 106 54.7
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 8.9e-25 117.9 110 51.8
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 8.9e-25 117.9 103 57.3
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 1.2e-24 117.5 109 52.3
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 1.2e-24 117.5 115 54.8
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 1.2e-24 117.5 96 59.4
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 1.5e-24 117.1 91 60.4
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 2.6e-24 116.3 119 52.9
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 2.6e-24 116.3 109 51.4
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 3.4e-24 115.9 109 49.5
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 4.4e-24 115.5 111 55.0
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 5.8e-24 115.2 119 52.1
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 7.6e-24 114.8 117 52.1
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 7.6e-24 114.8 107 48.6
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 9.9e-24 114.4 89 62.9
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 1.7e-23 113.6 104 54.8
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 2.2e-23 113.2 113 52.2
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 3.8e-23 112.5 104 53.8
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 3.8e-23 112.5 109 55.0
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.9e-23 112.1 109 51.4
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 6.4e-23 111.7 105 50.5
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 6.4e-23 111.7 120 52.5
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 8.4e-23 111.3 119 53.8
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 8.4e-23 111.3 111 51.4
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 8.4e-23 111.3 57 96.5
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 8.4e-23 111.3 105 53.3
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 1.1e-22 110.9 113 48.7
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.4e-22 110.5 103 53.4
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 1.4e-22 110.5 104 53.8
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 1.4e-22 110.5 109 48.6
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 1.9e-22 110.2 109 48.6
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 1.9e-22 110.2 114 47.4
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 3.2e-22 109.4 107 51.4
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 3.2e-22 109.4 118 50.8
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 4.1e-22 109.0 105 52.4
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 9.2e-22 107.8 99 51.5
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 9.2e-22 107.8 102 52.0
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 1.2e-21 107.5 107 50.5
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 1.6e-21 107.1 104 49.0
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.6e-21 107.1 107 52.3
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 2.7e-21 106.3 103 52.4
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 4.6e-21 105.5 111 46.8
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 4.6e-21 105.5 83 60.2
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.0e-20 104.4 113 46.0
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 1.3e-20 104.0 106 49.1
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 3.9e-20 102.4 106 48.1
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 3.9e-20 102.4 106 47.2
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 3.9e-20 102.4 92 53.3
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 3.9e-20 102.4 95 56.8
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 5.1e-20 102.1 114 47.4
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 5.1e-20 102.1 99 51.5
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 6.6e-20 101.7 110 47.3
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 6.6e-20 101.7 106 46.2
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 8.6e-20 101.3 106 46.2
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 1.1e-19 100.9 106 47.2
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 1.1e-19 100.9 106 47.2
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 1.1e-19 100.9 106 47.2
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 1.1e-19 100.9 106 46.2
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 1.9e-19 100.1 106 45.3
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 3.3e-19 99.4 106 44.3
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 4.3e-19 99.0 106 44.3
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 4.3e-19 99.0 99 48.5
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 5.6e-19 98.6 106 45.3
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 2.8e-18 96.3 109 47.7
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 2.8e-18 96.3 107 45.8
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 3.6e-18 95.9 110 45.5
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 3.6e-18 95.9 110 45.5
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 1.8e-17 93.6 107 43.0
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 4.0e-17 92.4 106 48.1
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 6.9e-17 91.7 106 44.3
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 2.0e-16 90.1 103 42.7
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 3.8e-15 85.9 110 40.0
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.9e-15 85.5 102 47.1
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 6.4e-15 85.1 60 70.0
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 6.4e-15 85.1 102 47.1
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 2.4e-14 83.2 103 36.9
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 9.3e-14 81.3 135 37.0
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 7.8e-13 78.2 84 45.2
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 3.0e-12 76.3 97 37.1
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 4.3e-11 72.4 97 37.1
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.1e-09 66.2 50 58.0
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 5.3e-09 65.5 99 33.3
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 1.2e-08 64.3 74 43.2
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.5e-08 63.9 90 41.1
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 2.0e-08 63.5 99 33.3
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 4.5e-08 62.4 62 56.5
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 2.2e-07 60.1 50 54.0


User provided reference genes

Program Settings