Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08350 Striga asiatica HOM05D000928 ORTHO05D000023 1.0e-57 226.5 114 100.0
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 3.8e-15 85.1 77 67.5
Nitab4.5_0000086g0120 Nicotiana tabacum HOM05D000928 ORTHO05D000023 1.3e-12 76.6 66 65.2
Solyc09g066290.3 Solanum lycopersicum HOM05D000928 ORTHO05D000023 3.9e-12 75.1 66 65.2
Sopen09g027990 Solanum pennellii HOM05D000928 ORTHO05D000023 3.9e-12 75.1 66 65.2
PGSC0003DMG400009714 Solanum tuberosum HOM05D000928 ORTHO05D000023 3.9e-12 75.1 66 65.2
Peaxi162Scf00134g00614 Petunia axillaris HOM05D000928 ORTHO05D000023 8.7e-12 73.9 66 63.6
SalBow4G0137 Salvia bowleyana HOM05D000928 ORTHO05D000023 8.7e-12 73.9 71 60.6
Oeu039682.1 Olea europaea HOM05D000928 ORTHO05D000023 1.1e-11 73.6 70 60.0
CAN.G977.2 Capsicum annuum HOM05D000928 ORTHO05D000023 1.5e-11 73.2 66 63.6
Nitab4.5_0005119g0010 Nicotiana tabacum HOM05D000928 ORTHO05D000023 4.3e-11 71.6 66 62.1
AUR62011887 Chenopodium quinoa HOM05D000928 ORTHO05D000023 5.6e-11 71.2 91 49.5
Dinv22415 Davidia involucrata HOM05D000928 ORTHO05D000023 5.6e-11 71.2 69 58.0
Migut.D00415 Erythranthe guttata HOM05D000928 ORTHO05D000023 7.4e-11 70.9 74 58.1
Glyma.10G035900 Glycine max HOM05D000928 ORTHO05D000023 7.4e-11 70.9 70 62.9
Rhsim01G0265200 Rhododendron simsii HOM05D000928 ORTHO05D000023 7.4e-11 70.9 70 58.6
MSTRG.21500 Avicennia marina HOM05D000928 ORTHO05D000023 9.6e-11 70.5 74 56.8
CANSAT78G1219 Cannabis sativa HOM05D000928 ORTHO05D000023 9.6e-11 70.5 72 56.9
Lj2A1153T50 Lonicera japonica HOM05D000928 ORTHO05D000023 9.6e-11 70.5 74 56.8
Psat6g055360 Pisum sativum HOM05D000928 ORTHO05D000023 9.6e-11 70.5 90 51.1
Sed0008055 Sechium edule HOM05D000928 ORTHO05D000023 9.6e-11 70.5 74 55.4
Actinidia09558 Actinidia chinensis HOM05D000928 ORTHO05D000023 1.3e-10 70.1 70 58.6
DCAR_012535 Daucus carota HOM05D000928 ORTHO05D000023 1.6e-10 69.7 67 58.2
Dinv34612 Davidia involucrata HOM05D000928 ORTHO05D000023 1.6e-10 69.7 69 58.0
Phvul.007G194200 Phaseolus vulgaris HOM05D000928 ORTHO05D000023 2.1e-10 69.3 90 54.4
TAR362G0945 Trochodendron aralioides HOM05D000928 ORTHO05D000023 2.1e-10 69.3 90 48.9
CSS0021821 Camellia sinensis var. sinensis HOM05D000928 ORTHO05D000023 2.8e-10 68.9 70 57.1
QL09p038262 Quercus lobata HOM05D000928 ORTHO05D000023 4.8e-10 68.2 70 55.7
EL10Ac5g10413 Beta vulgaris HOM05D000928 ORTHO05D000023 8.1e-10 67.4 73 53.4
Lj5g0008005 Lotus japonicus HOM05D000928 ORTHO05D000023 8.1e-10 67.4 95 45.3
PSO384G4222 Papaver somniferum HOM05D000928 ORTHO05D000023 8.1e-10 67.4 64 56.2
Nn1g02726 Nelumbo nucifera HOM05D000928 ORTHO05D000023 1.1e-09 67.0 69 53.6
Glyma.13G122300 Glycine max HOM05D000928 ORTHO05D000023 1.4e-09 66.6 71 56.3
Lalb_Chr21g0313821 Lupinus albus HOM05D000928 ORTHO05D000023 1.4e-09 66.6 66 57.6
TPR.G3579 Trifolium pratense HOM05D000928 ORTHO05D000023 1.4e-09 66.6 64 59.4
VMungo0720G2989 Vigna mungo HOM05D000928 ORTHO05D000023 1.4e-09 66.6 88 53.4
AUR62024728 Chenopodium quinoa HOM05D000928 ORTHO05D000023 1.8e-09 66.2 65 56.9
Ca_09688_v3 Cicer arietinum L. HOM05D000928 ORTHO05D000023 1.8e-09 66.2 90 47.8
GSVIVG01028305001 Vitis vinifera HOM05D000928 ORTHO05D000023 2.4e-09 65.9 69 53.6
Hund09597 Selenicereus undatus HOM05D000928 ORTHO05D000023 3.1e-09 65.5 73 52.1
Cfa002412 Carpinus fangiana HOM05D000928 ORTHO05D000023 4.0e-09 65.1 67 53.7
Haze_24611 Corylus avellana HOM05D000928 ORTHO05D000023 4.0e-09 65.1 67 53.7
TWI18G0710 Tripterygium wilfordii HOM05D000928 ORTHO05D000023 4.0e-09 65.1 71 53.5
Carub.0004s1252 Capsella rubella HOM05D000928 ORTHO05D000023 6.9e-09 64.3 65 55.4
Cc01_g18440 Coffea canephora HOM05D000928 ORTHO05D000023 6.9e-09 64.3 71 53.5
Duzib138G0579 Durio zibethinus HOM05D000928 ORTHO05D000023 6.9e-09 64.3 69 53.6
Gorai.007G145300 Gossypium raimondii HOM05D000928 ORTHO05D000023 6.9e-09 64.3 71 52.1
Manes.13G032900 Manihot esculenta HOM05D000928 ORTHO05D000023 6.9e-09 64.3 67 55.2
arahy.Tifrunner.gnm1.ann1.6R2DR5 Arachis hypogaea HOM05D000928 ORTHO05D000023 9.0e-09 63.9 69 56.5
arahy.Tifrunner.gnm1.ann1.VXR6Q5 Arachis hypogaea HOM05D000928 ORTHO05D000023 9.0e-09 63.9 69 56.5
Gohir.D11G135700 Gossypium hirsutum HOM05D000928 ORTHO05D000023 9.0e-09 63.9 71 52.1
Cpa.g.sc50.32 Carica papaya HOM05D000928 ORTHO05D000023 1.2e-08 63.5 64 54.7
AL4G26460 Arabidopsis lyrata HOM05D000928 ORTHO05D000023 1.5e-08 63.2 65 53.8
MD10G1185800 Malus domestica HOM05D000928 ORTHO05D000023 1.5e-08 63.2 72 54.2
Sc17g0000720 Simmondsia chinensis HOM05D000928 ORTHO05D000023 1.5e-08 63.2 73 53.4
Thecc.01G260200 Theobroma cacao HOM05D000928 ORTHO05D000023 1.5e-08 63.2 69 53.6
unitig_0.g152 Utricularia gibba HOM05D000928 ORTHO05D000023 2.0e-08 62.8 70 52.9
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 2.6e-08 62.4 64 54.7
Thhalv10016393m.g Eutrema salsugineum HOM05D000928 ORTHO05D000023 2.6e-08 62.4 65 53.8
Prupe.8G225300 Prunus persica HOM05D000928 ORTHO05D000023 2.6e-08 62.4 72 51.4
AT2G31240 Arabidopsis thaliana HOM05D000928 ORTHO05D000023 3.4e-08 62.0 65 53.8
MELO3C015740.2 Cucumis melo HOM05D000928 ORTHO05D000023 3.4e-08 62.0 74 48.6
Aqoxy1G01844 Aquilegia oxysepala HOM05D000928 ORTHO05D000023 4.5e-08 61.6 67 53.7
CsaV3_7G027390 Cucumis sativus L. HOM05D000928 ORTHO05D000023 4.5e-08 61.6 71 49.3
Gohir.A11G130000 Gossypium hirsutum HOM05D000928 ORTHO05D000023 4.5e-08 61.6 71 50.7
MD05G1199500 Malus domestica HOM05D000928 ORTHO05D000023 4.5e-08 61.6 74 51.4
Atru.chr5.1649 Acer truncatum HOM05D000928 ORTHO05D000023 5.8e-08 61.2 81 49.4
ClCG09G007750 Citrullus lanatus HOM05D000928 ORTHO05D000023 5.8e-08 61.2 74 47.3
FAN15G1834 Fragaria x ananassa HOM05D000928 ORTHO05D000023 5.8e-08 61.2 78 48.7
Sp4g13730 Schrenkiella parvula HOM05D000928 ORTHO05D000023 5.8e-08 61.2 65 52.3
RcHm_v2.0_Chr6g0288381 Rosa chinensis HOM05D000928 ORTHO05D000023 7.6e-08 60.8 78 46.2
Gohir.D08G207900 Gossypium hirsutum HOM05D000928 ORTHO05D000023 9.9e-08 60.5 63 55.6
Gorai.004G220300 Gossypium raimondii HOM05D000928 ORTHO05D000023 9.9e-08 60.5 63 55.6
TWI12G0138 Tripterygium wilfordii HOM05D000928 ORTHO05D000023 9.9e-08 60.5 67 53.7
FvH4_2g21700 Fragaria vesca HOM05D000928 ORTHO05D000023 1.3e-07 60.1 78 48.7
FAN24G1393 Fragaria x ananassa HOM05D000928 ORTHO05D000023 1.3e-07 60.1 78 48.7
Potri.005G222900 Populus trichocarpa HOM05D000928 ORTHO05D000023 1.3e-07 60.1 70 52.9
CiPaw.04G185800 Carya illinoinensis HOM05D000928 ORTHO05D000023 1.7e-07 59.7 67 52.2
FAN27G2497 Fragaria x ananassa HOM05D000928 ORTHO05D000023 1.7e-07 59.7 78 47.4
Lsat_1_v5_gn_9_8701 Lactuca sativa HOM05D000928 ORTHO05D000023 2.2e-07 59.3 72 50.0
Medtr1g070145 Medicago truncatula HOM05D000928 ORTHO05D000023 2.2e-07 59.3 90 44.4
TAR633G0595 Trochodendron aralioides HOM05D000928 ORTHO05D000023 6.4e-07 57.8 66 50.0
Sabra05G0171600 Salix brachista HOM05D000928 ORTHO05D000023 8.4e-07 57.4 70 51.4
THA.LOC104800874 Tarenaya hassleriana HOM05D000928 ORTHO05D000023 1.9e-06 56.2 64 48.4
Ah.11g049660 Amaranthus hybridus HOM05D000928 ORTHO05D000023 3.2e-06 55.5 69 47.8
BcaB06g28519 Brassica carinata HOM05D000928 ORTHO05D000023 3.2e-06 55.5 64 50.0
C04p60760 Brassica napus HOM05D000928 ORTHO05D000023 3.2e-06 55.5 64 50.0
BolC4t27567H Brassica oleracea HOM05D000928 ORTHO05D000023 3.2e-06 55.5 64 50.0
MBI18_g15331_MAGBIO Magnolia biondii HOM05D000928 ORTHO05D000023 3.2e-06 55.5 69 50.7
A04p24080 Brassica napus HOM05D000928 ORTHO05D000023 4.2e-06 55.1 65 49.2
BraA04t17927Z Brassica rapa HOM05D000928 ORTHO05D000023 4.2e-06 55.1 65 49.2
BcaB06g28434 Brassica carinata HOM05D000928 ORTHO05D000023 7.1e-06 54.3 70 44.3
Eucgr.K03268 Eucalyptus grandis HOM05D000928 ORTHO05D000023 9.3e-06 53.9 66 48.5


User provided reference genes

Program Settings