Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 4.5e-78 294.7 163 100.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.4e-55 219.2 160 68.1
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.2e-54 216.9 167 68.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.0e-50 202.2 158 66.5
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.0e-50 202.2 157 67.5
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 5.2e-50 201.4 164 65.9
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 2.4e-47 192.6 159 62.3
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 2.4e-47 192.6 159 64.8
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 7.0e-47 191.0 159 62.9
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.0e-46 189.5 159 62.9
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.5e-46 188.3 159 63.5
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 2.9e-45 185.7 159 61.0
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 3.8e-45 185.3 158 60.1
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.9e-44 183.0 156 61.5
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.6e-43 179.9 158 59.5
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 4.0e-42 175.3 165 57.6
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 8.8e-42 174.1 164 58.5
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 8.8e-42 174.1 161 54.0
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 3.4e-41 172.2 157 58.6
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 2.2e-40 169.5 159 61.0
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 7.0e-39 164.5 159 59.1
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 2.2e-37 159.5 167 54.5
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.9e-36 156.4 165 53.9
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.5e-36 154.8 157 56.1
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 5.5e-36 154.8 158 54.4
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 9.4e-36 154.1 160 53.1
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.1e-35 152.9 162 54.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 2.7e-35 152.5 157 52.9
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 3.6e-35 152.1 175 52.0
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 6.1e-35 151.4 160 54.4
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 8.0e-35 151.0 155 56.1
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.0e-34 150.6 162 54.9
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.4e-34 150.2 158 55.7
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-34 150.2 158 55.7
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.3e-34 149.4 164 52.4
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 2.3e-34 149.4 157 49.0
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.3e-34 149.4 157 52.2
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 2.3e-34 149.4 158 55.1
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 3.0e-34 149.1 159 54.7
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.0e-34 149.1 158 55.7
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 8.8e-34 147.5 152 53.9
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.2e-33 147.1 152 53.9
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.5e-33 146.7 164 53.0
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.5e-33 146.7 152 54.6
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.6e-33 146.0 158 52.5
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 4.4e-33 145.2 156 51.9
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.2e-32 142.9 163 50.9
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 2.8e-32 142.5 158 52.5
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 3.7e-32 142.1 165 49.7
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.4e-31 139.4 157 51.0
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 3.1e-31 139.0 158 51.3
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 3.1e-31 139.0 158 50.6
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.6e-30 136.7 154 51.3
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-30 136.3 118 53.4
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-30 136.3 118 53.4
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 2.7e-30 136.0 158 50.6
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 2.7e-30 136.0 150 47.3
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 4.5e-30 135.2 149 47.7
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 5.9e-30 134.8 150 48.7
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 7.7e-30 134.4 172 51.7
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.7e-30 134.4 164 49.4
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.3e-29 133.7 156 53.8
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.8e-29 132.1 166 45.8
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 5.0e-29 131.7 149 51.0
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.6e-29 131.3 159 48.4
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.6e-29 131.3 159 48.4
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 8.6e-29 131.0 157 52.2
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.1e-28 130.6 159 49.1
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-28 130.2 161 46.6
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.3e-28 129.0 117 57.3
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 4.2e-28 128.6 120 55.8
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 5.5e-28 128.3 159 46.5
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 7.2e-28 127.9 114 58.8
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 9.5e-28 127.5 153 48.4
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 9.5e-28 127.5 156 47.4
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 9.5e-28 127.5 162 46.9
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.1e-27 126.3 158 45.6
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.6e-27 125.6 161 47.2
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 2.3e-26 122.9 157 45.9
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.0e-26 122.1 165 46.1
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 5.2e-26 121.7 142 45.1
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.8e-26 121.3 159 47.2
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.6e-25 119.4 125 48.8
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 2.6e-25 119.4 157 45.9
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 1.7e-24 116.7 160 48.1
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.2e-24 116.3 172 45.3
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 2.8e-24 115.9 154 44.8
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.4e-23 113.6 124 46.8
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.8e-23 113.2 159 44.0
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-23 112.8 150 45.3
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 3.2e-23 112.5 154 47.4
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 4.1e-23 112.1 119 47.9
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 7.0e-23 111.3 157 46.5
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 7.0e-23 111.3 159 39.0
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 9.2e-23 110.9 154 46.8
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.2e-22 110.5 159 43.4
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.6e-22 110.2 150 46.7
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.5e-22 109.0 117 48.7
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 3.5e-22 109.0 149 48.3
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 4.5e-22 108.6 155 43.9
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 7.8e-22 107.8 157 45.2
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.3e-21 107.1 150 46.0
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 2.3e-21 106.3 139 43.9
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.3e-21 106.3 157 45.2
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.3e-21 106.3 120 47.5
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.9e-21 105.9 157 45.2
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 2.9e-21 105.9 116 48.3
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.9e-21 105.5 163 44.8
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.6e-21 104.8 161 44.7
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.9e-20 103.2 154 40.3
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 2.5e-20 102.8 155 36.8
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 3.3e-20 102.4 162 41.4
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 3.3e-20 102.4 159 42.1
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.2e-19 100.5 165 40.6
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 1.2e-19 100.5 116 46.6
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 2.1e-19 99.8 108 50.0
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 2.1e-19 99.8 164 39.6
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 2.8e-19 99.4 150 38.7
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.8e-19 99.4 150 38.7
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-19 99.4 164 40.2
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-19 99.4 164 40.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-19 99.4 109 51.4
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 3.6e-19 99.0 164 40.2
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 4.7e-19 98.6 163 39.9
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.1e-19 98.2 166 39.2
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 6.1e-19 98.2 153 37.9
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.4e-18 97.1 166 36.7
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-18 97.1 164 39.6
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.4e-18 97.1 157 43.9
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.3e-18 96.3 176 42.6
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 3.1e-18 95.9 142 44.4
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-18 95.9 164 39.0
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-18 95.9 164 39.0
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 5.2e-18 95.1 164 39.0
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 6.8e-18 94.7 151 37.7
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.8e-18 94.7 103 53.4
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.8e-18 94.7 165 40.0
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 1.5e-17 93.6 165 43.0
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 2.6e-17 92.8 152 38.2
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 4.4e-17 92.0 152 38.8
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 5.8e-17 91.7 164 38.4
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 7.5e-17 91.3 150 37.3
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.5e-17 91.3 153 42.5
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 9.8e-17 90.9 93 51.6
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 9.8e-17 90.9 164 41.5
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 9.8e-17 90.9 153 42.5
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 9.8e-17 90.9 166 39.8
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 1.7e-16 90.1 174 40.8
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 2.9e-16 89.4 161 39.1
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 2.9e-16 89.4 164 41.5
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.9e-16 88.6 139 45.3
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 4.9e-16 88.6 183 41.0
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 6.4e-16 88.2 115 45.2
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 8.3e-16 87.8 150 37.3
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.4e-15 87.0 160 36.2
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 1.9e-15 86.7 164 42.1
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 1.9e-15 86.7 164 42.1
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 1.9e-15 86.7 155 38.7
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 2.4e-15 86.3 165 41.8
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 3.2e-15 85.9 187 33.7
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 9.2e-15 84.3 189 37.6
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 1.2e-14 84.0 100 49.0
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 4.6e-14 82.0 144 36.8
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.8e-14 81.3 104 43.3
QL06p009891 Quercus lobata HOM05D003565 ORTHO05D003943 7.8e-14 81.3 145 30.3
QL06p009948 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-13 80.9 145 33.8
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.3e-13 80.5 94 46.8
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 3.0e-13 79.3 151 37.1
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.6e-13 78.2 167 36.5
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 1.1e-12 77.4 157 35.7
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-12 77.0 127 40.2
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.9e-12 76.6 142 38.0
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 2.5e-12 76.3 139 36.7
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 5.6e-12 75.1 122 41.0
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.6e-12 75.1 100 41.0
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 7.3e-12 74.7 162 37.7
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.8e-10 70.1 113 36.3
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 1.8e-10 70.1 101 44.6
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.9e-10 67.8 164 32.9
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 1.5e-09 67.0 142 39.4
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 3.4e-09 65.9 155 34.2
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.5e-09 64.7 165 30.3
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.9e-08 62.8 123 39.8
ECA234G1138 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.1e-07 60.8 138 38.4
FvH4_4g18450 Fragaria vesca HOM05D057627 ORTHO05D046375 1.1e-07 60.8 119 34.5
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 4.1e-07 58.9 143 33.6


User provided reference genes

Program Settings