Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 8.3e-120 433.7 220 100.0
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 4.1e-74 282.0 224 68.3
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 4.1e-74 282.0 224 67.9
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 4.1e-74 282.0 224 67.9
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.0e-69 267.3 224 64.3
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.8e-69 266.5 224 66.1
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 9.0e-66 254.2 225 64.4
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 9.0e-66 254.2 224 63.8
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 4.5e-65 251.9 222 63.1
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 4.5e-65 251.9 211 65.9
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 1.3e-64 250.4 222 64.4
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.7e-64 250.0 215 63.7
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 3.8e-64 248.8 221 63.3
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 5.0e-64 248.4 224 62.1
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 8.5e-64 247.7 224 62.5
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.2e-63 245.7 224 61.2
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 4.2e-63 245.4 225 62.7
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.6e-62 243.4 224 61.2
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 4.6e-62 241.9 224 60.3
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 7.9e-62 241.1 227 59.0
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 3.9e-61 238.8 233 59.7
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.5e-60 236.9 224 59.8
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.5e-60 236.9 225 62.7
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.0e-60 236.5 224 59.8
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 3.3e-60 235.7 187 68.4
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 9.7e-60 234.2 224 60.7
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 9.7e-60 234.2 224 59.8
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 9.7e-60 234.2 230 59.6
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.3e-59 233.8 227 59.9
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.8e-59 232.6 232 59.1
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 3.7e-59 232.3 229 59.0
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 6.3e-59 231.5 223 61.9
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 5.3e-58 228.4 224 62.1
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.0e-57 226.5 225 58.7
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 2.0e-57 226.5 231 56.3
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 4.5e-57 225.3 223 57.8
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 5.9e-57 224.9 175 70.3
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.3e-56 223.8 223 57.4
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.3e-56 223.8 225 57.8
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.3e-56 223.8 224 58.0
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.7e-56 223.4 227 55.9
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.2e-56 223.0 223 56.5
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.2e-56 223.0 188 64.9
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 3.8e-56 222.2 224 57.6
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 5.0e-56 221.9 227 56.8
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 8.5e-56 221.1 204 62.7
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.5e-55 219.5 222 56.8
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 3.2e-55 219.2 239 55.2
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 3.2e-55 219.2 224 56.7
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.5e-55 218.4 222 56.3
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 7.2e-55 218.0 230 57.0
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.2e-55 218.0 222 56.3
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 1.2e-54 217.2 223 56.5
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 2.1e-54 216.5 224 58.5
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.7e-54 216.1 223 58.3
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 4.7e-54 215.3 186 63.4
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 7.9e-54 214.5 224 59.8
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.9e-54 214.5 225 56.9
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.4e-53 213.8 225 56.9
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.4e-53 213.8 190 61.6
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.3e-53 213.0 200 61.0
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 3.0e-53 212.6 244 53.7
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.2e-53 211.8 199 59.8
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.2e-53 211.8 199 59.8
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.2e-53 211.8 226 55.3
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.1e-52 210.7 221 54.8
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-52 210.3 225 55.6
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 2.6e-52 209.5 240 52.1
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 3.3e-52 209.1 225 56.0
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 8.2e-51 204.5 226 55.3
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.4e-50 203.8 215 57.2
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.8e-50 203.4 223 57.0
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 2.4e-50 203.0 219 54.3
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 3.1e-50 202.6 221 53.8
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 7.0e-50 201.4 225 54.7
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 2.0e-49 199.9 196 60.2
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.7e-49 198.0 188 62.8
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.7e-48 196.8 230 50.9
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.7e-48 196.8 196 57.1
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 2.2e-48 196.4 305 43.0
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 3.8e-48 195.7 227 53.7
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 5.0e-48 195.3 224 52.7
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.5e-48 194.9 163 65.6
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 8.5e-48 194.5 200 55.0
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.5e-47 193.7 212 53.8
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 1.5e-47 193.7 220 53.6
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.9e-47 193.4 243 50.2
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 3.2e-47 192.6 224 54.5
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 5.5e-47 191.8 228 52.2
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 7.2e-47 191.4 227 51.5
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.2e-46 190.7 204 54.4
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.7e-46 189.5 159 65.4
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.7e-46 188.7 228 51.3
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 4.7e-46 188.7 222 54.1
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 4.7e-46 188.7 221 52.5
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 6.1e-46 188.3 231 48.1
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 8.0e-46 188.0 224 52.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.0e-45 187.6 207 52.7
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.0e-45 187.6 224 54.9
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.0e-45 187.6 229 51.5
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.8e-45 186.8 207 52.7
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.8e-45 186.8 136 70.6
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 2.3e-45 186.4 191 56.5
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 2.3e-45 186.4 319 42.0
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 3.0e-45 186.0 198 55.6
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 2.6e-44 183.0 226 50.9
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 2.6e-44 183.0 227 52.0
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 5.7e-44 181.8 209 52.6
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 8.2e-43 177.9 189 54.0
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 2.4e-42 176.4 225 50.2
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 3.1e-42 176.0 267 44.2
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.1e-42 176.0 204 52.9
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 4.1e-42 175.6 220 51.4
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 5.3e-42 175.3 197 53.3
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.2e-41 174.1 187 54.5
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.3e-40 170.6 201 52.2
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.7e-40 170.2 225 47.6
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 3.8e-40 169.1 157 63.7
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 6.5e-40 168.3 231 48.9
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.5e-39 167.2 202 51.0
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 2.5e-39 166.4 207 46.9
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.2e-38 164.1 191 53.9
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.2e-38 164.1 235 44.7
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.6e-38 163.7 233 44.6
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.6e-38 163.7 223 47.5
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.7e-38 162.9 199 47.2
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.7e-38 162.9 242 45.9
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 3.6e-38 162.5 205 46.3
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 4.7e-38 162.2 216 46.8
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 8.0e-38 161.4 172 54.7
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.0e-37 161.0 225 48.0
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 3.0e-37 159.5 211 46.4
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 4.0e-37 159.1 202 45.5
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.0e-37 159.1 238 45.0
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 5.2e-37 158.7 189 53.4
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 6.8e-37 158.3 211 46.0
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 6.8e-37 158.3 211 46.0
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.5e-36 157.1 122 62.3
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.6e-36 156.4 170 53.5
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 3.4e-36 156.0 219 44.3
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 3.4e-36 156.0 135 63.7
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 7.5e-36 154.8 272 41.2
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.3e-35 154.1 201 45.3
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 2.2e-35 153.3 192 49.0
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 3.7e-35 152.5 203 50.2
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 4.8e-35 152.1 118 65.3
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 6.3e-35 151.8 190 46.8
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 5.4e-34 148.7 111 64.9
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.6e-33 147.1 111 68.5
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.0e-32 144.4 117 65.8
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.7e-32 143.7 209 45.5
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.1e-31 141.0 192 46.9
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.3e-27 127.5 83 73.5
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.3e-27 127.5 83 73.5
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.1e-26 124.4 81 72.8
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 7.0e-26 121.7 219 41.1
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.7e-25 119.8 135 49.6
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 2.5e-23 113.2 155 48.4
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.3e-21 106.7 111 54.1
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 6.8e-21 105.1 164 42.1
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.3e-19 100.9 79 67.1
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 8.6e-16 88.2 103 44.7
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.4e-13 80.9 225 33.3
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.7e-11 72.8 79 48.1
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 9.2e-10 68.2 79 44.3
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 6.0e-09 65.5 43 69.8
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.3e-08 64.3 40 72.5


User provided reference genes

Program Settings