Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 0.0e+00 1250.0 658 100.0
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.5e-289 999.2 596 87.4
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.3e-285 986.1 595 85.9
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.4e-279 966.1 599 83.5
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.0e-278 962.2 596 83.7
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.6e-278 961.8 595 83.7
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.9e-277 958.4 596 83.1
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 3.8e-277 958.0 599 82.5
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.2e-276 954.9 596 82.7
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.0e-274 949.9 588 82.7
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.0e-274 949.9 596 82.6
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 3.9e-274 948.0 596 82.6
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 6.7e-274 947.2 597 82.2
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 8.8e-274 946.8 596 83.2
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 8.8e-274 946.8 596 83.2
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 3.3e-265 918.3 603 81.8
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 7.4e-265 917.1 598 80.6
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.8e-264 915.2 599 78.8
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 2.8e-264 915.2 597 80.6
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 4.1e-263 911.4 599 80.1
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 7.0e-263 910.6 606 78.4
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 9.4e-260 900.2 598 78.6
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 9.4e-260 900.2 599 77.3
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 6.1e-259 897.5 593 79.1
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.9e-258 894.8 595 78.2
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 6.7e-258 894.0 599 80.0
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 9.7e-257 890.2 594 78.3
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.7e-256 889.4 593 76.6
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.8e-256 888.6 594 78.3
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 3.7e-256 888.3 605 76.0
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 3.7e-256 888.3 586 79.4
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 4.8e-256 887.9 596 79.4
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 8.2e-256 887.1 593 76.4
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.1e-255 886.7 598 77.8
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.8e-255 885.9 596 77.9
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 7.7e-254 880.6 595 78.8
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.0e-253 880.2 594 77.6
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.1e-252 876.7 596 77.0
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 4.2e-252 874.8 594 76.6
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 5.5e-252 874.4 594 76.1
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 7.2e-252 874.0 598 76.8
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 2.1e-251 872.5 596 76.7
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 6.8e-250 867.5 596 75.2
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 1.2e-249 866.7 599 76.3
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 4.4e-249 864.8 595 76.6
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 4.4e-249 864.8 593 76.1
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 4.4e-249 864.8 599 76.5
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 5.7e-249 864.4 593 75.9
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.7e-248 862.8 595 74.1
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 6.3e-248 860.9 595 75.8
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 8.3e-248 860.5 602 75.4
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 7.0e-247 857.4 598 74.7
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 4.5e-246 854.7 600 73.8
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 4.5e-246 854.7 598 75.9
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.0e-245 853.6 600 73.7
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.3e-245 853.2 594 77.4
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.3e-245 853.2 607 73.3
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.2e-245 852.4 600 73.5
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 2.9e-245 852.0 594 74.9
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 2.9e-245 852.0 595 75.3
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 8.0e-243 844.0 604 70.2
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 8.0e-243 844.0 604 70.2
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 3.0e-242 842.0 598 73.7
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 3.0e-242 842.0 608 71.9
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 4.0e-242 841.6 600 73.2
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.8e-242 840.9 600 72.7
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 8.8e-242 840.5 598 76.4
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.8e-242 840.5 600 72.7
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 4.4e-241 838.2 601 74.0
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.2e-240 835.9 602 72.4
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.4e-239 833.2 600 71.3
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.2e-238 830.1 606 74.3
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.6e-238 829.7 607 72.8
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 2.3e-237 825.9 871 55.7
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 7.2e-236 820.8 596 72.5
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 7.2e-236 820.8 593 72.7
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 2.1e-235 819.3 593 71.8
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 2.1e-235 819.3 593 71.8
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 2.1e-235 819.3 596 72.3
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 4.7e-235 818.1 600 73.0
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 8.0e-235 817.4 601 71.7
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.0e-234 817.0 599 72.6
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.8e-234 816.2 606 71.5
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 6.8e-234 814.3 593 72.3
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 6.8e-234 814.3 593 72.3
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 6.8e-234 814.3 593 72.3
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 4.4e-233 811.6 605 70.7
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 7.5e-233 810.8 597 71.7
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.7e-232 809.7 602 71.3
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 2.2e-232 809.3 596 72.0
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 8.3e-232 807.4 597 73.7
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.4e-231 806.6 600 72.5
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 5.4e-231 804.7 596 71.1
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 5.9e-230 801.2 593 70.2
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.0e-229 800.4 593 69.8
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.5e-228 796.6 615 69.1
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 9.5e-228 793.9 592 70.6
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.8e-227 792.3 594 71.7
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 8.0e-227 790.8 602 69.4
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.7e-224 783.1 596 69.3
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 2.2e-224 782.7 592 69.6
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 2.4e-223 779.2 609 68.5
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 5.6e-220 768.1 592 69.1
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.6e-219 766.5 604 68.0
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 5.2e-218 761.5 602 68.6
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.1e-215 753.8 610 67.5
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.6e-214 750.0 610 66.7
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.7e-214 749.2 593 65.9
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 7.8e-214 747.7 593 65.6
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.5e-212 742.7 561 67.7
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 3.3e-212 742.3 544 71.3
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 3.1e-210 735.7 644 63.7
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 7.1e-207 724.5 606 65.2
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-206 723.8 600 65.7
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 1.6e-206 723.4 614 64.2
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.4e-199 699.5 602 63.8
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 2.4e-199 699.5 597 64.0
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 5.3e-194 681.8 593 63.6
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.8e-185 651.7 568 61.6
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.3e-178 628.6 473 71.0
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.2e-167 592.4 517 64.8
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.8e-165 587.0 451 71.2
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.4e-157 560.8 598 54.7
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 3.7e-147 526.2 604 48.2
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 2.4e-146 523.5 596 49.5
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.1e-143 514.6 598 52.3
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 2.1e-126 457.2 616 44.3
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.4e-125 454.5 618 48.7
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.8e-118 430.3 595 44.2
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.5e-92 344.7 209 81.3
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.8e-89 332.4 242 68.6
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 3.2e-74 283.9 322 50.6
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 3.0e-72 277.3 613 35.4
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.3e-70 271.9 234 67.9
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.4e-68 263.8 269 58.4
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 2.4e-61 241.1 576 31.4
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 5.0e-51 206.8 148 70.3
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 6.1e-41 173.3 151 62.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 4.8e-30 137.1 98 65.3
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.6e-25 122.1 201 40.3
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 4.0e-24 117.5 601 24.5
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 3.7e-22 110.9 78 65.4
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 6.3e-22 110.2 67 76.1
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 1.8e-21 108.6 210 47.1
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 3.1e-21 107.8 78 64.1
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.7e-17 94.7 122 41.0
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 8.3e-14 83.2 90 46.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.8e-11 74.3 59 64.4
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.2e-09 69.3 93 43.0


User provided reference genes

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