Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 0.0e+00 1757.7 863 100.0
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1322.8 891 75.3
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 0.0e+00 1266.1 892 72.8
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.3e-309 1066.2 889 62.9
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 7.9e-307 1057.0 866 64.3
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 1.1e-305 1053.1 895 62.7
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 8.2e-304 1047.0 894 62.6
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 1.4e-303 1046.2 863 62.9
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 1.4e-300 1036.2 850 64.0
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 1.6e-299 1032.7 886 62.0
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 2.7e-299 1031.9 866 63.7
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 2.7e-299 1031.9 831 64.5
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 2.7e-299 1031.9 847 64.1
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 2.2e-296 1022.3 868 62.2
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 2.2e-296 1022.3 871 62.7
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 3.7e-296 1021.5 844 62.6
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 6.3e-296 1020.8 872 62.7
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 2.4e-295 1018.8 926 58.9
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 6.9e-295 1017.3 848 63.3
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.3e-293 1013.1 847 62.7
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 5.0e-293 1011.1 847 62.7
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 6.5e-293 1010.7 873 62.2
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 1.2e-291 1006.5 875 61.3
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 1.6e-291 1006.1 847 62.5
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 2.1e-291 1005.7 849 63.1
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 1.0e-290 1003.4 868 61.3
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 3.9e-290 1001.5 839 62.3
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 7.4e-289 997.3 886 60.3
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.8e-288 995.3 891 59.6
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 8.2e-288 993.8 878 60.9
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 1.1e-287 993.4 852 62.3
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 3.1e-287 991.9 842 62.8
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 5.9e-286 987.6 847 61.6
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 1.3e-285 986.5 904 59.1
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 8.5e-285 983.8 895 59.6
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 1.2e-283 979.9 874 59.7
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 2.7e-283 978.8 901 59.0
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 3.9e-282 974.9 865 60.0
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 1.1e-281 973.4 900 59.1
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 3.3e-281 971.8 874 59.5
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 7.4e-281 970.7 846 60.8
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 9.7e-281 970.3 905 57.9
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 6.3e-280 967.6 866 59.8
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 6.5e-277 957.6 855 60.5
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 1.4e-276 956.4 894 58.5
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 1.4e-274 949.9 840 59.9
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 4.4e-273 944.9 885 58.1
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 6.3e-272 941.0 1000 53.2
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 1.1e-271 940.3 864 58.6
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 5.9e-270 934.5 882 58.2
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 5.5e-268 927.9 894 56.9
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 5.5e-268 927.9 894 56.9
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 7.2e-268 927.5 839 58.6
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 1.0e-266 923.7 792 61.6
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 4.0e-266 921.8 894 57.3
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 5.2e-266 921.4 864 57.4
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 8.8e-266 920.6 809 60.6
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 7.5e-265 917.5 838 58.7
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 6.3e-264 914.4 836 58.3
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 1.1e-263 913.7 836 58.0
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 1.1e-263 913.7 862 57.4
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 3.1e-263 912.1 836 58.1
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 3.8e-261 905.2 837 58.4
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 2.5e-260 902.5 840 58.0
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 4.7e-259 898.3 801 59.2
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 6.1e-259 897.9 857 57.4
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 1.2e-257 893.6 849 57.7
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 2.0e-257 892.9 904 55.2
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 2.6e-257 892.5 836 58.1
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 4.4e-257 891.7 845 58.3
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 5.4e-255 884.8 833 56.9
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 3.3e-252 875.5 839 56.5
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 2.0e-249 866.3 879 56.4
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 2.8e-248 862.4 885 55.9
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 4.1e-247 858.6 947 52.0
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 7.3e-244 847.8 796 58.0
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 8.9e-242 840.9 824 54.7
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 4.4e-241 838.6 846 54.1
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 7.5e-241 837.8 831 54.8
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 1.3e-240 837.0 824 55.1
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 9.2e-239 830.9 824 55.2
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 1.8e-234 816.6 829 54.2
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 4.1e-231 805.4 829 53.7
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 9.2e-231 804.3 829 54.3
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 9.2e-231 804.3 829 54.3
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.2e-230 803.9 829 53.9
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 6.0e-230 801.6 829 53.8
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.6e-225 786.2 845 52.7
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 1.3e-224 783.9 825 53.8
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 4.1e-223 778.9 827 52.7
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 1.7e-221 773.5 830 52.8
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 1.4e-218 763.8 787 54.0
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.5e-204 717.2 844 49.6
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 9.0e-202 708.0 778 52.8
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 2.4e-194 683.3 779 51.7
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 3.4e-193 679.5 710 55.2
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.6e-174 616.3 890 43.7
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 8.8e-173 611.7 508 62.2
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.4e-170 603.6 887 43.6
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 1.0e-149 535.0 608 52.3
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 5.2e-149 532.7 892 40.6
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 8.0e-142 508.8 398 65.8
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.6e-140 503.8 845 39.6
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 3.8e-136 490.0 400 63.8
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 2.8e-126 457.2 470 56.4
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 8.0e-126 455.7 448 56.7
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 3.5e-121 440.3 369 62.9
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.5e-113 413.7 363 62.0
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 1.1e-109 402.1 372 58.9
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 3.5e-105 387.1 467 49.5
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 6.6e-88 329.7 275 60.7
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 8.1e-86 322.8 310 54.8
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.5e-79 302.0 559 37.7
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.5e-79 302.0 559 37.7
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.9e-59 234.6 175 69.1
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 1.1e-58 232.6 838 27.6
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.2e-58 231.1 283 51.9
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.2e-57 229.2 363 43.0
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 6.3e-54 216.9 151 72.2
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.7e-49 201.4 117 76.1
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 7.9e-49 199.9 511 28.8
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 9.1e-45 186.4 249 41.4
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.7e-43 182.2 145 66.2
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.1e-42 179.5 137 67.2
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.2e-38 165.2 137 60.6
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 3.1e-29 134.8 270 32.6
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 3.6e-25 121.3 119 50.4
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 7.5e-23 113.6 151 40.4
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 4.1e-21 107.8 159 43.4
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 2.6e-15 88.6 119 41.2
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 7.5e-15 87.0 102 51.0
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 7.5e-15 87.0 236 30.1
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 7.8e-12 77.0 57 66.7
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 1.0e-11 76.6 108 40.7
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-11 75.1 55 67.3
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-11 75.1 55 67.3
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-11 75.1 55 67.3
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-11 75.1 55 67.3
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-11 75.1 55 67.3
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-11 75.1 55 67.3
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-11 75.1 55 67.3
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-11 75.1 55 67.3
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-11 75.1 55 67.3
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-11 75.1 55 67.3
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.9e-11 74.7 55 67.3
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.6e-09 69.3 33 87.9
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 2.6e-07 62.0 45 66.7
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 2.6e-07 62.0 48 60.4
Cre13.g580450 Chlamydomonas reinhardtii HOM05D005283 ORTHO05D006769 1.3e-06 59.7 213 26.8


User provided reference genes

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