Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 3801.1 1926 100.0
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2637.8 1957 68.6
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2583.5 1952 67.7
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2539.2 1941 67.2
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2247.2 1976 59.5
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2209.5 1984 57.4
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2195.6 1968 57.4
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2192.9 1966 57.4
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2190.2 1965 57.4
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2186.4 1973 57.0
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2181.8 1960 58.4
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2180.6 1982 57.0
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2176.7 1971 57.3
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2161.3 1961 56.6
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2129.4 2036 56.0
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2101.6 1961 55.9
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2097.4 1981 55.9
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2081.6 1985 55.1
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2076.2 1978 55.1
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2065.8 1963 54.4
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2060.0 1966 54.7
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2053.1 1983 54.7
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2018.4 1970 53.8
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2018.0 1965 53.6
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2016.5 1969 53.4
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2011.1 1987 53.3
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2009.6 1969 54.2
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2008.0 1957 54.4
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2007.6 2002 53.7
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2003.4 1975 53.3
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2001.5 1967 52.6
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 1991.1 1953 52.8
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 1988.4 1973 53.1
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 1987.6 1973 52.8
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1983.0 1975 53.2
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1977.6 2181 50.2
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 1976.4 1958 51.9
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 1968.4 1944 53.5
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 1959.9 1952 52.2
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1959.5 1971 52.4
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1958.0 2161 51.0
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 1942.2 1992 52.0
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 1931.4 1956 52.2
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 1916.4 1985 51.3
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 1914.8 1867 53.5
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 1914.0 1987 51.1
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1897.1 1963 52.0
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1895.6 1985 51.1
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1894.8 1961 51.4
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1890.2 1944 51.5
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1889.8 1964 51.7
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 1889.4 2174 47.9
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1886.7 1946 52.8
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1885.2 1961 51.1
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1884.8 1959 51.5
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1882.1 1951 51.6
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1881.7 1978 50.7
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1879.4 1978 50.9
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1876.3 1953 51.2
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1872.8 1979 50.8
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1870.1 1971 50.7
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1869.0 1977 50.7
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1864.7 1824 53.4
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1860.5 1960 51.3
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1859.7 1969 50.7
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1851.6 2276 45.6
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1847.4 1963 51.1
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1831.2 1942 51.1
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1822.4 1979 49.1
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1805.8 1943 49.5
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1802.3 1814 51.5
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1758.0 1597 56.7
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1742.2 1982 48.0
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1720.7 1946 49.3
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1686.0 1935 47.9
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1683.7 1283 66.2
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1683.3 1835 49.9
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1653.3 2005 45.8
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1412.1 1421 53.0
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1374.8 1182 59.2
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1325.5 1837 41.4
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1261.9 1172 59.1
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1246.9 1271 51.6
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1215.7 2003 37.9
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1205.7 2039 37.5
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1144.0 2026 36.4
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1118.2 1088 53.8
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 2.2e-288 996.9 2145 33.2
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.4e-286 989.6 979 55.9
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 5.3e-271 939.1 999 49.2
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 9.5e-252 875.2 774 57.2
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.9e-240 836.3 1007 45.7
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.3e-213 748.4 971 43.4
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 3.5e-198 697.2 897 44.0
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 3.5e-198 697.2 792 48.4
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 2.8e-187 661.0 496 67.7
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.4e-186 658.7 1117 37.7
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 4.2e-167 594.0 531 56.5
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 7.2e-159 566.6 522 58.0
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 4.4e-148 530.8 668 47.5
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 8.6e-136 490.0 398 61.8
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 5.6e-135 487.3 539 51.0
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.4e-122 446.0 292 74.0
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.3e-112 412.9 664 40.7
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 2.1e-105 389.0 464 44.8
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 8.7e-104 383.6 446 45.7
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.7e-99 369.4 852 31.1
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.2e-89 336.7 216 77.3
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.3e-88 333.2 251 62.2
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.4e-85 323.2 336 54.5
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 2.5e-79 302.4 339 48.1
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.6e-76 292.4 380 43.4
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.5e-52 213.4 233 52.4
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 7.7e-52 211.1 233 49.4
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 4.4e-47 195.3 283 42.4
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.2e-46 193.0 329 36.2
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 1.2e-44 187.2 192 52.6
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.9e-42 179.9 320 35.9
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 3.6e-41 175.6 192 49.5
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 1.4e-40 173.7 526 27.9
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.1e-37 162.5 302 33.1
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.8e-30 139.4 183 43.2
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 7.7e-28 131.3 144 49.3
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 6.6e-27 128.3 284 30.3
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 2.5e-26 126.3 146 43.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.2e-25 124.0 93 67.7
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 3.6e-25 122.5 148 43.9
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 9.8e-23 114.4 135 43.7
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 9.2e-21 107.8 107 50.5
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.0e-19 104.4 291 27.8
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 8.6e-19 101.3 92 50.0
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 2.5e-18 99.8 229 33.6
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.6e-17 95.9 164 36.6
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.2e-15 90.9 288 25.7
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 2.0e-15 90.1 102 44.1
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 2.2e-14 86.7 121 35.5
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.2e-14 86.7 79 51.9
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.2e-14 86.7 79 51.9
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.9e-14 85.5 79 50.6
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.4e-13 84.0 119 34.5
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 4.1e-13 82.4 180 30.0
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 5.4e-13 82.0 144 39.6
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 3.5e-12 79.3 202 27.7
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 4.6e-12 79.0 164 34.1
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 5.0e-11 75.5 158 27.2
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 8.6e-11 74.7 117 37.6
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 8.6e-11 74.7 117 37.6
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 7.3e-10 71.6 88 37.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.2e-09 70.9 87 41.4
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 2.8e-09 69.7 46 65.2
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 4.0e-08 65.9 74 37.8
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 4.4e-07 62.4 53 50.9
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 2.2e-06 60.1 106 33.0
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 2.9e-06 59.7 128 25.8


User provided reference genes

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