Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08259 Striga asiatica HOM05D006626 ORTHO05D007352 3.6e-146 521.5 258 100.0
QL01p053860 Quercus lobata HOM05D006626 ORTHO05D007352 4.5e-16 89.4 68 66.2
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 7.7e-16 88.6 82 56.1
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 1.7e-15 87.4 42 97.6
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 5.0e-15 85.9 82 57.3
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 8.5e-15 85.1 82 57.3
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 1.5e-14 84.3 82 57.3
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 1.5e-14 84.3 82 57.3
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 2.5e-14 83.6 82 56.1
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 2.5e-14 83.6 42 88.1
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 3.2e-14 83.2 82 54.9
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 3.2e-14 83.2 43 86.0
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 3.2e-14 83.2 82 54.9
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 3.2e-14 83.2 82 56.1
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 3.2e-14 83.2 82 56.1
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 3.2e-14 83.2 82 56.1
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 3.2e-14 83.2 82 56.1
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 4.2e-14 82.8 82 56.1
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 4.2e-14 82.8 82 54.9
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 4.2e-14 82.8 82 54.9
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 5.5e-14 82.4 82 54.9
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 5.5e-14 82.4 82 54.9
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 5.5e-14 82.4 42 85.7
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 5.5e-14 82.4 82 54.9
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 5.5e-14 82.4 82 54.9
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 9.4e-14 81.6 42 85.7
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 9.4e-14 81.6 82 56.1
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 9.4e-14 81.6 82 56.1
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 9.4e-14 81.6 82 56.1
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 9.4e-14 81.6 82 54.9
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 1.2e-13 81.3 42 85.7
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 1.6e-13 80.9 42 88.1
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 1.6e-13 80.9 82 54.9
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 1.6e-13 80.9 82 54.9
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 1.6e-13 80.9 43 86.0
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 1.6e-13 80.9 42 85.7
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 1.6e-13 80.9 82 54.9
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 2.1e-13 80.5 42 83.3
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 2.1e-13 80.5 82 53.7
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.1e-13 80.5 82 54.9
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 2.7e-13 80.1 82 54.9
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 2.7e-13 80.1 82 53.7
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 3.6e-13 79.7 82 53.7
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 3.6e-13 79.7 82 54.9
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 3.6e-13 79.7 82 53.7
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 3.6e-13 79.7 82 53.7
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 4.7e-13 79.3 82 52.4
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 8.0e-13 78.6 82 53.7
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 8.0e-13 78.6 82 53.7
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 8.0e-13 78.6 82 53.7
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 8.0e-13 78.6 82 53.7
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 8.0e-13 78.6 82 53.7
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 8.0e-13 78.6 82 53.7
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 8.0e-13 78.6 82 53.7
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 8.0e-13 78.6 82 53.7
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 1.4e-12 77.8 42 83.3
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 1.4e-12 77.8 82 51.2
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 1.4e-12 77.8 42 83.3
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 1.8e-12 77.4 42 81.0
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 2.3e-12 77.0 82 48.8
AUR62040984 Chenopodium quinoa HOM05D006626 ORTHO05D007352 2.3e-12 77.0 42 78.6
AUR62042106 Chenopodium quinoa HOM05D006626 ORTHO05D007352 2.3e-12 77.0 42 78.6
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.3e-12 77.0 82 52.4
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 2.3e-12 77.0 82 51.2
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 3.0e-12 76.6 82 52.4
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 3.0e-12 76.6 82 52.4
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 3.0e-12 76.6 82 52.4
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 3.0e-12 76.6 42 78.6
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 3.0e-12 76.6 82 52.4
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 3.0e-12 76.6 42 78.6
Hund12078 Selenicereus undatus HOM05D006626 ORTHO05D007352 3.0e-12 76.6 40 82.5
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 4.0e-12 76.3 42 81.0
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 4.0e-12 76.3 82 52.4
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 5.2e-12 75.9 42 78.6
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 5.2e-12 75.9 82 51.2
QL01p055053 Quercus lobata HOM05D006626 ORTHO05D007352 5.2e-12 75.9 82 51.2
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 6.8e-12 75.5 42 78.6
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 6.8e-12 75.5 82 51.2
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 8.8e-12 75.1 42 81.0
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 1.2e-11 74.7 82 51.2
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 1.5e-11 74.3 107 44.9
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 1.5e-11 74.3 82 50.0
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 1.5e-11 74.3 42 78.6
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 2.0e-11 73.9 42 76.2
Atru.chr11.672 Acer truncatum HOM05D006626 ORTHO05D007352 2.6e-11 73.6 43 76.7
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 2.6e-11 73.6 42 78.6
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.6e-11 73.6 42 78.6
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.6e-11 73.6 42 78.6
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.6e-11 73.6 42 78.6
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.6e-11 73.6 42 78.6
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.6e-11 73.6 42 78.6
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 2.6e-11 73.6 42 76.2
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 2.6e-11 73.6 42 73.8
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 4.4e-11 72.8 42 76.2
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 4.4e-11 72.8 42 73.8
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 1.7e-10 70.9 42 71.4
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 2.8e-10 70.1 44 70.5
HPP92_012592 Vanilla planifolia HOM05D006626 ORTHO05D007352 3.7e-10 69.7 41 75.6
Os07g0695700 Oryza sativa ssp. japonica HOM05D006626 ORTHO05D007352 8.3e-10 68.6 42 71.4
TAR633G2221 Trochodendron aralioides HOM05D006626 ORTHO05D007352 8.3e-10 68.6 45 66.7
Zm00001eb105220 Zea mays HOM05D006626 ORTHO05D007352 9.1e-09 65.1 41 70.7
Mapoly0001s0170 Marchantia polymorpha HOM05D006626 ORTHO05D007352 1.2e-08 64.7 41 68.3
SEGI_14743 Sequoiadendron giganteum HOM05D006626 ORTHO05D007352 2.2e-07 60.5 42 64.3


User provided reference genes

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