Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 5.2e-69 264.2 132 100.0
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 1.5e-28 129.8 103 67.0
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 9.4e-26 120.6 114 58.8
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 6.9e-21 104.4 116 50.9
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 2.6e-20 102.4 111 53.2
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 5.9e-20 101.3 130 50.0
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 3.2e-18 95.5 125 49.6
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 5.5e-18 94.7 147 47.6
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 7.2e-18 94.4 71 64.8
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 7.2e-18 94.4 138 40.6
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 9.4e-18 94.0 120 45.8
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 1.6e-17 93.2 109 48.6
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 1.6e-17 93.2 109 47.7
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 2.1e-17 92.8 129 41.1
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 4.7e-17 91.7 123 43.9
SGA_v2.0_scaffold47G17522 Striga asiatica HOM05D000631 ORTHO05D000524 1.4e-16 90.1 108 49.1
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 1.1e-15 87.0 96 50.0
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 2.0e-15 86.3 112 46.4
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 4.4e-15 85.1 114 43.9
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 1.3e-14 83.6 111 46.8
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 1.3e-14 83.6 115 45.2
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 1.3e-14 83.6 109 45.0
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 2.2e-14 82.8 117 45.3
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 3.7e-14 82.0 126 41.3
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 1.4e-13 80.1 108 43.5
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 1.8e-13 79.7 108 50.0
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 1.8e-13 79.7 140 41.4
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 2.4e-13 79.3 111 45.9
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 1.2e-12 77.0 115 43.5
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.2e-12 77.0 115 45.2
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 1.6e-12 76.6 128 39.1
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 2.0e-12 76.3 138 39.1
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 2.0e-12 76.3 128 43.0
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 2.0e-12 76.3 131 39.7
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 2.0e-12 76.3 131 39.7
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 2.0e-12 76.3 114 41.2
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 2.0e-12 76.3 130 40.8
Sopen02g038130 Solanum pennellii HOM05D007296 ORTHO05D009201 2.0e-12 76.3 104 46.2
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 2.6e-12 75.9 117 45.3
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 2.6e-12 75.9 136 40.4
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 2.6e-12 75.9 124 42.7
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 3.5e-12 75.5 137 35.8
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 3.5e-12 75.5 115 40.0
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 4.5e-12 75.1 137 35.8
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 5.9e-12 74.7 130 38.5
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.0e-11 73.9 113 43.4
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 1.0e-11 73.9 114 42.1
Ca_30679_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.3e-11 73.6 110 39.1
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 1.3e-11 73.6 114 42.1
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 1.7e-11 73.2 120 43.3
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 2.2e-11 72.8 103 45.6
SalBow7G1031 Salvia bowleyana HOM05D007296 ORTHO05D009201 2.2e-11 72.8 90 45.6
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 2.9e-11 72.4 129 38.8
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 3.8e-11 72.0 77 51.9
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 3.8e-11 72.0 124 40.3
Sabra15G0109100 Salix brachista HOM05D000631 ORTHO05D000524 3.8e-11 72.0 92 43.5
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 5.0e-11 71.6 75 54.7
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 5.0e-11 71.6 101 42.6
Ciclev10022926m.g Citrus clementina HOM05D007296 ORTHO05D009201 6.5e-11 71.2 112 41.1
Solyc02g093525.1 Solanum lycopersicum HOM05D007296 ORTHO05D009201 6.5e-11 71.2 122 39.3
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 8.5e-11 70.9 116 38.8
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 8.5e-11 70.9 136 39.0
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 1.1e-10 70.5 128 38.3
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 1.5e-10 70.1 106 45.3
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 1.9e-10 69.7 96 38.5
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 1.9e-10 69.7 113 41.6
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 2.5e-10 69.3 102 41.2
Gohir.A07G055400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 3.2e-10 68.9 109 36.7
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 5.5e-10 68.2 115 38.3
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 7.2e-10 67.8 116 34.5
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 7.2e-10 67.8 114 38.6
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 7.2e-10 67.8 114 38.6
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 7.2e-10 67.8 111 40.5
Gohir.D07G059700 Gossypium hirsutum HOM05D007296 ORTHO05D009201 9.4e-10 67.4 109 36.7
Gorai.001G063200 Gossypium raimondii HOM05D007296 ORTHO05D009201 9.4e-10 67.4 109 36.7
TAR374G0807 Trochodendron aralioides HOM05D007296 ORTHO05D009201 9.4e-10 67.4 87 46.0
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.6e-09 66.6 109 39.4
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 3.6e-09 65.5 118 38.1
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 3.6e-09 65.5 105 39.0
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 8.0e-09 64.3 112 40.2
Glyma.05G042900 Glycine max HOM05D007296 ORTHO05D009201 1.0e-08 63.9 110 35.5
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 1.0e-08 63.9 142 37.3
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 1.4e-08 63.5 111 38.7
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 1.8e-08 63.2 100 43.0
Manes.14G057736 Manihot esculenta HOM05D007296 ORTHO05D009201 1.8e-08 63.2 110 42.7
Thecc.03G117800 Theobroma cacao HOM05D007296 ORTHO05D009201 1.8e-08 63.2 122 35.2
COL.COLO4_30221 Corchorus olitorius HOM05D007296 ORTHO05D009201 2.3e-08 62.8 107 35.5
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 3.0e-08 62.4 135 40.0
Lalb_Chr07g0183081 Lupinus albus HOM05D007296 ORTHO05D009201 3.0e-08 62.4 139 33.1
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 3.0e-08 62.4 75 49.3
Migut.K01416 Erythranthe guttata HOM05D007296 ORTHO05D009201 5.2e-08 61.6 104 38.5
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 6.7e-08 61.2 130 40.8
QL10p006090 Quercus lobata HOM05D007296 ORTHO05D009201 6.7e-08 61.2 103 37.9
Actinidia33329 Actinidia chinensis HOM05D007296 ORTHO05D009201 1.2e-07 60.5 64 51.6
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 1.5e-07 60.1 131 34.4
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 2.6e-07 59.3 130 40.0
Glyma.05G115500 Glycine max HOM05D007296 ORTHO05D009201 2.6e-07 59.3 119 36.1
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 4.4e-07 58.5 130 40.0
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 4.4e-07 58.5 108 36.1
Phvul.003G206500 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 1.3e-06 57.0 94 38.3
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 4.8e-06 55.1 132 30.3
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 6.3e-06 54.7 128 32.0
Os01g0938400 Oryza sativa ssp. japonica HOM05D024678 ORTHO05D025976 6.3e-06 54.7 70 45.7
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 8.2e-06 54.3 133 36.1


User provided reference genes

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