Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 0.0e+00 1424.8 739 100.0
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 0.0e+00 1131.3 783 79.8
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 0.0e+00 1092.4 751 79.4
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.5e-306 1055.8 731 78.7
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.5e-306 1055.8 731 78.7
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 2.0e-306 1055.4 751 77.5
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.1e-288 994.6 756 73.0
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 9.2e-288 993.4 749 72.6
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.3e-286 989.6 761 72.5
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 1.2e-284 983.0 764 71.5
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 5.2e-283 977.6 755 71.9
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 3.4e-282 974.9 757 70.5
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 2.9e-281 971.8 751 70.4
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 2.7e-279 965.3 754 70.2
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 1.0e-278 963.4 764 70.4
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 5.0e-278 961.1 763 70.9
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 1.5e-277 959.5 746 72.3
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 5.6e-277 957.6 739 71.0
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 1.4e-275 953.0 756 69.0
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 5.2e-275 951.0 766 69.1
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 8.9e-275 950.3 760 68.8
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 1.5e-274 949.5 753 69.1
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.0e-274 949.1 766 67.8
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 4.4e-274 948.0 752 70.2
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.8e-274 947.6 766 67.6
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.9e-273 945.3 753 70.3
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 2.9e-273 945.3 756 69.7
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.1e-272 943.3 751 69.9
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 1.1e-272 943.3 751 70.2
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.2e-272 941.8 765 68.1
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 7.0e-272 940.6 765 68.2
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 1.2e-271 939.9 770 67.7
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.2e-271 939.9 756 69.2
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 2.1e-271 939.1 752 69.4
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 2.1e-271 939.1 758 69.9
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 2.7e-271 938.7 754 67.8
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 4.6e-271 937.9 739 68.9
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 7.8e-271 937.2 796 67.0
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 1.3e-270 936.4 764 67.4
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 3.9e-270 934.9 765 68.4
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.5e-269 932.2 748 67.8
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 3.3e-269 931.8 754 69.2
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 7.3e-269 930.6 753 68.3
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 9.5e-269 930.2 766 66.4
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 9.5e-269 930.2 738 69.4
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.6e-268 929.5 742 69.0
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 3.6e-268 928.3 754 68.7
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 3.6e-268 928.3 751 68.3
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.4e-267 926.4 750 68.3
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 1.4e-267 926.4 764 67.1
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 6.8e-267 924.1 763 68.4
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 2.0e-266 922.5 752 67.8
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.4e-266 921.8 757 68.4
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 3.4e-266 921.8 753 68.4
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 3.7e-265 918.3 748 67.6
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 6.4e-265 917.5 753 67.9
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 8.3e-265 917.1 764 66.9
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.1e-264 916.8 765 67.1
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 5.4e-264 914.4 757 67.8
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.2e-263 913.3 765 67.8
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.6e-263 912.9 750 67.2
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.3e-262 909.8 750 67.2
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 2.3e-262 909.1 765 66.4
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 3.0e-262 908.7 748 66.7
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.9e-262 908.3 748 66.6
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 8.6e-262 907.1 801 66.4
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 1.9e-261 906.0 746 67.4
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 4.3e-261 904.8 742 67.4
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 9.5e-261 903.7 765 66.9
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 1.2e-260 903.3 754 67.1
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 1.8e-259 899.4 749 67.3
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 6.8e-259 897.5 746 68.0
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 1.5e-258 896.3 750 67.6
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.5e-258 896.3 758 66.5
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.3e-257 893.3 745 67.8
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.7e-257 892.9 737 67.7
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 4.9e-257 891.3 749 67.0
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 6.4e-257 891.0 764 65.7
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 1.1e-256 890.2 734 67.2
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.4e-256 889.8 711 69.9
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 5.4e-256 887.9 740 67.2
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 5.4e-256 887.9 760 66.1
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 5.4e-256 887.9 757 65.9
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 7.1e-256 887.5 765 66.0
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.2e-255 886.7 740 67.3
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 7.8e-255 884.0 764 66.1
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 1.3e-254 883.2 767 64.9
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 2.3e-254 882.5 763 65.0
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 2.3e-254 882.5 767 66.0
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 6.6e-254 880.9 759 65.2
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 6.6e-254 880.9 756 65.9
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 2.5e-253 879.0 763 64.5
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 3.3e-253 878.6 764 65.3
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 3.3e-253 878.6 765 65.4
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 9.6e-253 877.1 759 64.7
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 3.6e-252 875.2 745 65.5
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 3.6e-252 875.2 761 65.2
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 4.8e-252 874.8 766 64.6
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 6.2e-252 874.4 760 64.6
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 8.1e-252 874.0 764 64.9
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 8.1e-252 874.0 764 64.9
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 1.4e-251 873.2 764 64.4
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 1.4e-251 873.2 760 64.5
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 1.2e-250 870.2 723 67.1
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 2.0e-250 869.4 765 64.6
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.0e-250 869.4 763 64.7
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 4.4e-250 868.2 747 65.9
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 7.6e-250 867.5 764 64.1
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 2.9e-249 865.5 750 65.2
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 4.9e-249 864.8 764 64.5
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 4.9e-249 864.8 745 65.5
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 1.2e-247 860.1 749 64.2
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 1.6e-247 859.8 759 64.7
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.5e-247 858.6 787 63.2
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.7e-246 856.3 777 63.6
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 2.3e-246 855.9 745 64.8
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 3.0e-246 855.5 749 64.1
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.3e-245 851.7 777 63.2
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.8e-243 846.3 767 64.0
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 1.8e-243 846.3 742 65.0
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.1e-243 845.5 759 64.0
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.3e-241 840.1 769 62.7
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.2e-239 833.6 741 64.1
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.0e-233 813.9 730 64.1
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 7.9e-231 804.3 756 62.4
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.1e-229 800.4 755 61.3
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 2.8e-228 795.8 723 62.9
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 1.1e-227 793.9 761 59.7
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 2.3e-222 776.2 811 57.3
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 1.5e-221 773.5 745 60.5
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 3.7e-220 768.8 772 59.6
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.0e-214 749.2 557 73.1
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 1.7e-209 733.4 731 58.7
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 2.9e-209 732.6 679 63.0
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 4.2e-208 728.8 766 55.6
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 2.6e-202 709.5 741 56.4
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 1.3e-201 707.2 732 57.5
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 5.5e-184 648.7 746 52.8
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.3e-180 637.5 457 75.9
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.3e-172 610.9 581 61.6
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 2.6e-149 533.5 373 76.1
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.6e-135 487.6 744 43.3
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 9.6e-128 461.8 447 59.5
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.1e-126 458.4 626 47.0
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.5e-120 437.2 766 40.3
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.5e-120 437.2 766 40.3
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.1e-118 431.8 772 40.9
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 8.4e-116 422.2 303 74.3
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.5e-115 419.5 516 48.8
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 3.3e-104 383.6 441 54.0
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.2e-98 365.2 392 55.4
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 2.8e-95 354.0 287 69.3
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 2.8e-87 327.4 612 37.7
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.4e-86 324.3 293 66.2
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.6e-80 304.3 183 86.3
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 4.2e-75 287.0 355 52.4
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 3.6e-74 283.9 269 58.4
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 9.4e-67 259.2 370 43.2
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.1e-62 243.8 552 37.3
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 4.1e-54 217.2 634 30.8
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 5.0e-52 210.3 458 35.6
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 3.1e-49 201.1 585 34.5
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 1.4e-46 192.2 242 52.9
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 2.7e-37 161.4 104 76.0
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 6.8e-33 146.7 104 72.1
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 2.9e-31 141.4 171 48.5
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 1.9e-30 138.7 76 94.7
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 7.8e-29 133.3 82 78.0
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 1.0e-28 132.9 72 86.1
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 2.5e-27 128.3 85 72.9
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 2.5e-27 128.3 85 72.9
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 4.3e-27 127.5 232 41.8
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 1.2e-26 125.9 82 76.8
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-21 107.8 344 32.0
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.7e-20 105.5 52 96.2
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.1e-17 96.3 50 94.0
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 5.3e-17 94.0 216 33.8
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 5.8e-16 90.5 50 82.0
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 6.4e-15 87.0 61 67.2
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 2.4e-14 85.1 70 61.4
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 2.7e-13 81.6 254 31.5
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.6e-13 80.9 84 57.1
Hma1.2p1_0006F.1_g004670 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.3e-12 79.3 238 33.6
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.1e-11 76.3 85 51.8


User provided reference genes

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