Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 5.4e-139 497.7 252 100.0
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.8e-95 351.7 252 71.8
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 2.5e-91 339.3 256 71.1
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 8.2e-87 324.3 248 68.1
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 3.1e-86 322.4 254 64.6
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 9.0e-86 320.9 254 64.2
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 2.6e-85 319.3 251 68.5
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 5.8e-85 318.2 252 63.9
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.2e-84 316.2 252 63.9
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 8.4e-84 314.3 248 65.3
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 3.2e-83 312.4 254 65.0
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 4.2e-83 312.0 254 63.8
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 5.5e-83 311.6 249 63.9
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.1e-82 309.7 243 63.8
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 4.6e-82 308.5 245 63.7
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.0e-81 307.4 253 63.2
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 1.0e-81 307.4 288 60.1
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.3e-81 307.0 252 62.3
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 1.8e-81 306.6 245 63.3
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.8e-81 306.6 284 61.3
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 3.0e-81 305.8 252 62.3
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.9e-81 305.4 255 64.3
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 6.7e-81 304.7 227 67.8
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 8.7e-81 304.3 277 58.5
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.1e-80 303.9 284 60.9
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.3e-80 302.4 248 62.5
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 3.3e-80 302.4 253 62.8
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 5.7e-80 301.6 255 62.4
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.3e-79 300.4 247 63.2
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.6e-79 300.1 247 63.6
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.6e-79 300.1 244 63.5
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 2.2e-79 299.7 263 60.1
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.2e-79 299.7 244 60.7
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 2.2e-79 299.7 234 66.7
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.8e-79 299.3 255 63.5
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 6.3e-79 298.1 244 63.5
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.1e-78 297.4 234 66.7
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.4e-78 297.0 244 61.9
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.8e-78 296.6 244 64.8
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.4e-78 296.2 248 61.7
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.4e-78 296.2 246 61.4
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 5.3e-78 295.0 244 62.7
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.3e-78 295.0 234 65.4
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 6.9e-78 294.7 248 61.7
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 9.0e-78 294.3 246 61.4
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.4e-77 292.4 249 61.4
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 5.9e-77 291.6 235 63.8
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 7.7e-77 291.2 256 62.1
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.0e-76 290.8 252 61.9
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.7e-76 290.0 249 61.0
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 2.9e-76 289.3 246 61.4
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 3.8e-76 288.9 227 64.8
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 3.8e-76 288.9 248 61.7
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 8.5e-76 287.7 245 61.6
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.5e-76 287.7 249 60.2
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 8.5e-76 287.7 252 61.5
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.4e-75 287.0 246 61.4
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 4.2e-75 285.4 244 62.7
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 5.5e-75 285.0 238 61.3
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 5.5e-75 285.0 252 61.5
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 9.4e-75 284.3 251 62.2
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.1e-74 283.1 244 61.1
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.1e-74 283.1 244 61.1
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 4.6e-74 282.0 246 62.6
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 4.6e-74 282.0 228 65.8
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 7.9e-74 281.2 244 59.4
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.0e-73 280.8 245 61.6
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 3.9e-73 278.9 245 62.4
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.9e-73 278.9 244 59.4
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 5.1e-73 278.5 249 59.4
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 6.7e-73 278.1 245 62.4
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.1e-72 277.3 216 64.8
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.5e-72 276.9 244 57.8
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.0e-72 276.6 246 60.6
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 2.5e-72 276.2 245 61.2
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 3.3e-72 275.8 258 61.6
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 7.4e-72 274.6 245 61.6
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 7.4e-72 274.6 246 60.2
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 7.4e-72 274.6 256 60.2
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 9.7e-72 274.2 279 54.8
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.3e-71 273.9 230 60.9
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 1.3e-71 273.9 235 60.9
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.7e-71 273.5 248 56.5
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 2.2e-71 273.1 257 57.2
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 6.3e-71 271.6 244 61.1
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 6.3e-71 271.6 248 56.0
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 8.2e-71 271.2 241 57.7
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 1.1e-70 270.8 232 65.1
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.4e-70 269.6 237 61.2
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.5e-69 266.9 249 58.6
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 2.0e-69 266.5 245 61.2
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.0e-69 266.5 242 59.5
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 2.0e-69 266.5 233 61.8
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 3.4e-69 265.8 242 58.7
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 3.4e-69 265.8 232 61.6
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 3.4e-69 265.8 222 64.0
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 3.4e-69 265.8 226 61.5
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 4.5e-69 265.4 251 57.8
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 5.9e-69 265.0 249 59.4
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.7e-68 263.5 222 63.1
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.7e-68 263.5 222 63.1
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.7e-68 263.5 207 64.7
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 3.8e-68 262.3 255 58.4
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 6.5e-68 261.5 249 57.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 4.2e-67 258.8 222 63.1
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 4.2e-67 258.8 222 63.1
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 4.2e-67 258.8 251 57.0
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.2e-66 257.3 223 61.0
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 3.6e-66 255.8 244 57.0
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 6.1e-66 255.0 257 56.8
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.0e-65 254.2 262 56.9
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.4e-65 253.8 196 67.3
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 6.7e-65 251.5 227 60.4
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.1e-64 250.8 194 67.5
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.8e-62 243.4 164 73.2
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.4e-62 243.0 229 59.4
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 2.9e-60 236.1 256 52.7
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 6.5e-60 235.0 207 60.4
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.2e-58 230.7 167 70.1
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.6e-58 230.3 238 52.1
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 3.6e-58 229.2 230 51.7
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 4.8e-55 218.8 195 60.5
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 4.0e-49 199.1 234 48.3
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.2e-48 197.6 170 61.2
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.4e-48 195.7 257 51.8
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 9.7e-48 194.5 169 62.1
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 1.7e-47 193.7 175 58.3
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 1.7e-47 193.7 236 48.7
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 1.1e-46 191.0 232 49.6
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 2.5e-43 179.9 123 71.5
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 5.5e-43 178.7 232 46.1
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 4.7e-42 175.6 124 66.9
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 5.4e-38 162.2 230 41.3
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 9.1e-38 161.4 202 50.0
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.8e-36 156.0 112 72.3
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 1.4e-33 147.5 238 39.5
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.8e-31 139.8 207 40.6
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 3.2e-30 136.3 148 54.7
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 4.5e-29 132.5 91 69.2
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 2.8e-26 123.2 121 55.4
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 2.8e-26 123.2 121 55.4
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 2.8e-26 123.2 121 55.4
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 2.3e-25 120.2 169 45.6
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.2e-25 119.0 120 52.5
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.5e-24 117.5 120 52.5
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 4.4e-24 115.9 119 52.1
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.1e-22 111.3 118 47.5
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 3.6e-18 96.3 246 31.3
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.4e-17 94.4 194 35.1
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 4.4e-16 89.4 104 51.0
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 3.7e-15 86.3 116 51.7
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.0e-12 78.2 102 44.1
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 1.6e-10 70.9 44 75.0
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 6.2e-10 68.9 59 62.7
PRCOL_00003248 Prasinoderma coloniale HOM05D004631 ORTHO05D005223 8.1e-10 68.6 145 30.3
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.4e-09 67.8 77 50.6
SMO361G0571 Selaginella moellendorffii HOM05D018282 ORTHO05D005223 2.0e-08 63.9 66 53.0
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 5.8e-08 62.4 36 77.8


User provided reference genes

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