Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 2.3e-112 409.1 226 100.0
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 3.6e-09 66.2 64 53.1
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 6.1e-09 65.5 64 53.1
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 8.0e-09 65.1 64 53.1
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 8.0e-09 65.1 64 53.1
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 1.0e-08 64.7 73 47.9
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.0e-08 64.7 64 53.1
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.0e-08 64.7 66 53.0
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.4e-08 64.3 64 53.1
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.4e-08 64.3 71 50.7
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 1.4e-08 64.3 71 50.7
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.8e-08 63.9 71 50.7
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.8e-08 63.9 71 50.7
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.8e-08 63.9 80 47.5
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.3e-08 63.5 42 73.8
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.3e-08 63.5 61 54.1
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.3e-08 63.5 42 73.8
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 2.3e-08 63.5 61 54.1
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 3.0e-08 63.2 61 54.1
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 3.0e-08 63.2 61 54.1
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 3.0e-08 63.2 59 55.9
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 3.0e-08 63.2 49 63.3
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 3.0e-08 63.2 59 55.9
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 52.5
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 54.1
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 52.5
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 54.1
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 52.5
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 54.1
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 52.5
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 54.1
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 52.5
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 54.1
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 52.5
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 4.0e-08 62.8 42 71.4
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 52.5
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 4.0e-08 62.8 42 71.4
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 4.0e-08 62.8 49 65.3
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.0e-08 62.8 41 70.7
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 4.0e-08 62.8 59 54.2
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 4.0e-08 62.8 61 52.5
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 4.0e-08 62.8 66 48.5
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 5.2e-08 62.4 42 69.0
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 5.2e-08 62.4 42 71.4
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 5.2e-08 62.4 42 71.4
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 5.2e-08 62.4 49 65.3
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 5.2e-08 62.4 49 65.3
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 5.2e-08 62.4 42 71.4
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 5.2e-08 62.4 42 71.4
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 5.2e-08 62.4 49 65.3
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.2e-08 62.4 49 65.3
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.2e-08 62.4 49 65.3
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 5.2e-08 62.4 49 65.3
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 5.2e-08 62.4 49 65.3
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 5.2e-08 62.4 42 71.4
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 5.2e-08 62.4 42 69.0
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 5.2e-08 62.4 42 71.4
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 5.2e-08 62.4 42 71.4
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 6.8e-08 62.0 49 63.3
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 6.8e-08 62.0 49 63.3
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 6.8e-08 62.0 49 63.3
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 6.8e-08 62.0 49 63.3
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 6.8e-08 62.0 42 69.0
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 6.8e-08 62.0 66 53.0
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 6.8e-08 62.0 49 63.3
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 6.8e-08 62.0 49 63.3
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 6.8e-08 62.0 49 63.3
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 6.8e-08 62.0 42 69.0
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 8.8e-08 61.6 64 50.0
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 8.8e-08 61.6 61 50.8
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 8.8e-08 61.6 42 71.4
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 8.8e-08 61.6 73 45.2
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 8.8e-08 61.6 49 61.2
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 8.8e-08 61.6 49 61.2
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 8.8e-08 61.6 40 70.0
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 8.8e-08 61.6 42 71.4
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 8.8e-08 61.6 42 66.7
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.2e-07 61.2 40 70.0
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.2e-07 61.2 40 70.0
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.2e-07 61.2 40 70.0
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 1.2e-07 61.2 40 70.0
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.2e-07 61.2 40 70.0
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.2e-07 61.2 40 70.0
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.2e-07 61.2 40 70.0
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.2e-07 61.2 42 69.0
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.2e-07 61.2 40 70.0
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.2e-07 61.2 40 70.0
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.2e-07 61.2 42 69.0
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.2e-07 61.2 42 69.0
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.2e-07 61.2 42 69.0
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.2e-07 61.2 48 62.5
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.2e-07 61.2 42 69.0
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.2e-07 61.2 42 69.0
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 1.2e-07 61.2 42 66.7
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.5e-07 60.8 47 61.7
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.5e-07 60.8 47 61.7
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.5e-07 60.8 47 61.7
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.5e-07 60.8 49 63.3
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.5e-07 60.8 47 63.8
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.5e-07 60.8 47 63.8
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.0e-07 60.5 42 69.0
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.0e-07 60.5 42 69.0
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 2.0e-07 60.5 31 83.9
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 2.0e-07 60.5 31 83.9
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 2.0e-07 60.5 31 83.9
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.0e-07 60.5 63 50.8
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 2.6e-07 60.1 52 59.6
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.6e-07 60.1 42 66.7
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.6e-07 60.1 42 66.7
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.6e-07 60.1 49 63.3
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 2.6e-07 60.1 31 80.6
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 3.4e-07 59.7 49 59.2
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 3.4e-07 59.7 49 57.1
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 4.4e-07 59.3 49 61.2
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 4.4e-07 59.3 66 48.5
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 4.4e-07 59.3 61 49.2
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 5.7e-07 58.9 42 64.3
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 7.5e-07 58.5 29 86.2
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.3e-06 57.8 42 61.9
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.7e-06 57.4 47 61.7
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.7e-06 57.4 42 66.7
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.2e-06 57.0 42 61.9
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.2e-06 57.0 42 61.9
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 2.2e-06 57.0 49 59.2
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.2e-06 57.0 31 77.4
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 3.7e-06 56.2 42 59.5
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.7e-06 56.2 49 59.2
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.7e-06 56.2 49 59.2
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 6.3e-06 55.5 40 65.0


User provided reference genes

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