Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.2e-149 533.5 340 100.0
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 1.3e-103 380.6 366 66.1
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 1.9e-99 366.7 361 65.4
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 9.0e-89 331.3 337 63.5
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 1.7e-87 327.0 343 60.6
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 1.7e-87 327.0 343 60.6
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 2.2e-87 326.6 349 61.6
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 3.8e-87 325.9 349 62.2
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 8.4e-87 324.7 345 60.0
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.9e-86 323.6 347 57.6
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 6.0e-85 318.5 346 59.0
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 7.4e-83 311.6 346 61.0
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 1.1e-81 307.8 293 63.8
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 5.8e-80 302.0 316 56.3
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.3e-79 300.8 353 55.5
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.3e-79 300.8 354 55.6
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.9e-79 299.7 342 55.8
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.9e-79 299.7 357 55.2
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 2.5e-78 296.6 263 64.3
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 3.2e-78 296.2 262 64.9
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 5.5e-78 295.4 324 54.9
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 7.1e-78 295.0 344 57.0
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.2e-77 294.3 345 58.6
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.2e-77 294.3 263 63.9
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 1.6e-77 293.9 357 54.3
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 2.1e-77 293.5 336 56.5
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 2.1e-77 293.5 347 57.1
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.1e-77 293.5 342 55.0
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 2.1e-77 293.5 349 55.9
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 3.5e-77 292.7 337 56.4
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.5e-77 292.7 338 58.0
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 3.5e-77 292.7 318 55.3
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.0e-76 291.2 336 56.2
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 1.0e-76 291.2 318 55.0
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.3e-76 290.8 349 54.2
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 5.1e-76 288.9 340 55.9
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 5.1e-76 288.9 341 55.7
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 5.1e-76 288.9 341 55.7
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 6.7e-76 288.5 342 55.6
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 6.7e-76 288.5 348 56.6
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 1.1e-75 287.7 368 53.3
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.1e-75 287.7 247 62.8
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.1e-75 287.7 349 56.7
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 1.5e-75 287.3 344 55.2
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.5e-75 287.3 342 54.7
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 2.5e-75 286.6 325 59.4
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 3.3e-75 286.2 338 55.0
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.3e-75 286.2 333 57.4
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 5.7e-75 285.4 262 61.8
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.3e-74 284.3 352 54.8
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 2.2e-74 283.5 259 62.9
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 2.2e-74 283.5 259 62.9
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 2.2e-74 283.5 344 56.7
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 2.2e-74 283.5 341 57.2
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 8.2e-74 281.6 340 54.7
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 1.1e-73 281.2 339 55.5
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.1e-73 279.6 341 54.3
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 4.1e-73 279.3 338 57.4
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 5.3e-73 278.9 328 59.8
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 5.3e-73 278.9 341 54.8
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 9.0e-73 278.1 344 54.4
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.5e-72 277.3 335 51.0
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 2.0e-72 276.9 346 54.0
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 5.9e-72 275.4 340 58.2
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 5.0e-71 272.3 344 53.8
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 5.0e-71 272.3 338 55.9
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 5.0e-71 272.3 328 57.0
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 5.0e-71 272.3 350 52.6
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 8.5e-71 271.6 261 59.8
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.1e-70 271.2 330 58.5
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 2.5e-70 270.0 345 55.4
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 3.2e-70 269.6 354 52.8
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 3.2e-70 269.6 263 61.2
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 4.2e-70 269.2 325 54.2
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 4.2e-70 269.2 260 58.5
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 7.2e-70 268.5 247 62.3
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 9.4e-70 268.1 349 53.3
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 7.9e-69 265.0 349 53.3
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 5.1e-68 262.3 335 54.0
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 1.1e-67 261.2 339 50.7
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 2.5e-67 260.0 337 53.1
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 4.8e-66 255.8 342 52.6
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 3.4e-64 249.6 349 51.6
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 4.5e-64 249.2 374 50.3
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 4.5e-64 249.2 243 59.7
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 1.0e-63 248.1 264 55.3
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 1.7e-63 247.3 259 57.9
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.7e-63 247.3 245 57.6
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 3.8e-63 246.1 247 57.9
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 5.5e-62 242.3 342 48.8
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 7.2e-62 241.9 351 50.7
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 7.2e-62 241.9 300 49.7
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 9.4e-62 241.5 329 48.9
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 9.4e-62 241.5 322 48.8
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.4e-60 237.7 340 51.5
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.2e-58 230.3 327 49.8
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.8e-58 229.9 260 53.5
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 2.4e-57 226.9 232 59.9
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 5.3e-57 225.7 314 49.4
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 5.3e-57 225.7 240 56.7
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 5.9e-56 222.2 336 51.8
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 5.9e-56 222.2 226 58.8
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.0e-55 221.5 243 56.4
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.3e-55 221.1 331 45.9
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.3e-55 221.1 334 52.1
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 2.2e-55 220.3 224 58.9
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 2.9e-55 219.9 336 43.8
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.9e-54 217.2 345 49.3
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 2.5e-54 216.9 234 58.1
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 2.1e-53 213.8 412 40.5
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.6e-53 213.0 252 52.0
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 5.2e-52 209.1 340 49.7
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 2.6e-51 206.8 262 48.9
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 2.8e-50 203.4 317 47.9
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 2.8e-50 203.4 317 47.9
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 1.8e-49 200.7 354 46.0
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.2e-48 198.0 226 55.3
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 3.5e-48 196.4 314 48.1
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.3e-47 194.5 316 47.8
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.3e-47 194.5 316 47.8
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 2.9e-47 193.4 316 47.8
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 2.9e-47 193.4 356 41.0
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 5.5e-46 189.1 219 55.3
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 6.1e-45 185.7 192 57.8
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.7e-39 167.5 215 58.6
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 4.2e-38 162.9 281 39.1
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 5.4e-33 146.0 140 66.4
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.2e-32 144.8 142 57.7
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.0e-31 141.7 108 72.2
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.3e-31 141.4 226 52.2
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.4e-25 121.3 149 45.6
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 3.2e-25 120.2 150 42.0
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 1.7e-23 114.4 130 42.3
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 3.0e-23 113.6 222 41.9
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.0e-19 100.9 129 41.9
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 2.6e-19 100.5 131 37.4
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.4e-17 94.7 159 37.7
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.0e-16 90.9 125 40.8
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 6.6e-15 85.9 114 56.1
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 4.3e-14 83.2 96 50.0
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 7.3e-14 82.4 119 48.7
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 6.8e-12 75.9 113 45.1
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 5.8e-11 72.8 130 47.7
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 9.8e-11 72.0 119 48.7
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 2.2e-10 70.9 127 44.9
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 2.4e-09 67.4 32 84.4
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.2e-09 67.0 43 67.4
Os04g0392300 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.5e-06 58.2 123 34.1
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 7.3e-06 55.8 29 86.2


User provided reference genes

Program Settings