Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 9.3e-65 250.0 120 100.0
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 1.7e-42 176.0 120 69.2
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 7.0e-36 154.1 121 62.8
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 1.2e-35 153.3 122 60.7
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 4.5e-35 151.4 125 57.6
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 7.7e-35 150.6 118 58.5
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.7e-34 149.4 119 59.7
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 2.2e-34 149.1 121 58.7
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.9e-34 148.7 118 58.5
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 6.5e-34 147.5 118 57.6
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 1.4e-33 146.4 120 58.3
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 3.2e-33 145.2 118 58.5
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 5.5e-33 144.4 118 61.0
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 5.5e-33 144.4 118 56.8
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 5.5e-33 144.4 116 57.8
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 1.2e-32 143.3 122 54.1
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 1.6e-32 142.9 119 58.8
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 1.6e-32 142.9 135 50.4
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.6e-32 142.9 124 57.3
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 3.6e-32 141.7 120 59.2
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 3.6e-32 141.7 125 56.8
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.4e-31 139.8 119 58.0
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 1.8e-31 139.4 122 54.1
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 1.8e-31 139.4 122 53.3
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 1.8e-31 139.4 122 54.1
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.8e-31 139.4 124 53.2
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.8e-31 139.4 127 52.0
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.3e-31 139.0 116 56.0
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 2.3e-31 139.0 122 54.1
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.3e-31 139.0 119 55.5
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 3.9e-31 138.3 122 52.5
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 3.9e-31 138.3 118 53.4
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 6.7e-31 137.5 120 58.3
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 8.8e-31 137.1 120 54.2
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.5e-30 136.3 121 52.1
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.0e-30 136.0 119 54.6
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 2.6e-30 135.6 119 52.9
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 2.6e-30 135.6 122 52.5
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 2.6e-30 135.6 124 58.9
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 3.3e-30 135.2 121 53.7
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 3.3e-30 135.2 121 54.5
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 5.7e-30 134.4 122 51.6
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.7e-30 134.4 120 61.7
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 5.7e-30 134.4 119 53.8
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 7.4e-30 134.0 117 57.3
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 1.3e-29 133.3 122 54.9
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 1.3e-29 133.3 124 53.2
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 1.3e-29 133.3 124 54.0
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.7e-29 132.9 122 52.5
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 1.7e-29 132.9 119 52.9
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.7e-29 132.9 124 53.2
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.7e-29 132.9 120 51.7
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 2.2e-29 132.5 125 54.4
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.8e-29 132.1 120 51.7
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 2.8e-29 132.1 121 52.9
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.7e-29 131.7 120 51.7
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 8.2e-29 130.6 120 60.8
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 1.1e-28 130.2 119 52.9
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 1.1e-28 130.2 119 52.1
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 2.4e-28 129.0 127 51.2
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.1e-28 128.6 120 59.2
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 4.1e-28 128.3 135 47.4
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.3e-28 127.9 120 50.8
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 9.1e-28 127.1 119 53.8
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 9.1e-28 127.1 121 56.2
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 1.2e-27 126.7 121 50.4
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.2e-27 126.7 122 52.5
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.6e-27 126.3 119 54.6
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 2.0e-27 125.9 118 52.5
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 4.5e-27 124.8 133 50.4
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 5.9e-27 124.4 119 52.1
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.0e-26 123.6 117 51.3
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.0e-26 123.6 90 60.0
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.3e-26 123.2 123 51.2
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.2e-26 122.5 130 49.2
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 2.2e-26 122.5 124 50.8
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.9e-26 122.1 127 50.4
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 2.9e-26 122.1 128 51.6
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 3.8e-26 121.7 125 48.8
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 5.0e-26 121.3 129 50.4
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 8.5e-26 120.6 119 48.7
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.9e-25 119.4 128 50.8
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 2.5e-25 119.0 124 49.2
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.2e-25 118.6 116 49.1
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.2e-25 118.6 118 48.3
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 4.2e-25 118.2 118 49.2
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 9.4e-25 117.1 122 50.8
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 1.2e-24 116.7 117 51.3
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 2.1e-24 115.9 121 50.4
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.7e-24 115.5 118 48.3
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 2.7e-24 115.5 128 50.0
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 6.1e-24 114.4 118 47.5
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 1.0e-23 113.6 123 48.0
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.4e-23 113.2 121 46.3
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 1.4e-23 113.2 127 48.0
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 2.3e-23 112.5 121 47.9
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 2.3e-23 112.5 125 49.6
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 5.2e-23 111.3 116 50.0
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 8.8e-23 110.5 120 46.7
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.2e-22 110.2 124 46.0
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.5e-22 109.8 117 47.0
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 5.7e-22 107.8 116 45.7
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 7.5e-22 107.5 115 47.0
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.7e-22 107.1 117 47.0
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 1.3e-21 106.7 116 46.6
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.1e-20 103.6 121 46.3
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.4e-20 103.2 88 51.1
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 1.8e-20 102.8 116 49.1
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 1.8e-20 102.8 88 59.1
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 5.3e-20 101.3 130 42.3
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 1.6e-19 99.8 65 63.1
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 1.6e-19 99.8 116 44.0
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 2.0e-19 99.4 120 43.3
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.7e-19 99.0 124 44.4
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.0e-18 97.1 127 39.4
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 5.0e-18 94.7 120 44.2
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.5e-17 92.4 121 41.3
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 3.2e-17 92.0 106 42.5
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 5.5e-17 91.3 121 39.7
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.6e-16 89.7 121 40.5
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 3.0e-15 85.5 130 35.4
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 7.5e-14 80.9 85 48.2
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 7.5e-14 80.9 112 39.3
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 1.3e-13 80.1 122 36.1
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.7e-13 79.7 82 40.2
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 3.7e-13 78.6 99 43.4
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 8.3e-13 77.4 96 35.4
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 8.3e-13 77.4 96 41.7
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.4e-12 76.6 113 38.9
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 1.4e-12 76.6 64 54.7
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.1e-12 75.1 51 64.7
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 4.1e-12 75.1 63 52.4
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.1e-12 75.1 66 43.9
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.1e-12 73.9 50 62.0
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.3e-10 70.1 62 48.4
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.3e-10 69.3 65 46.2
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 3.8e-10 68.6 81 43.2
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 1.2e-08 63.5 77 44.2
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.0e-07 60.5 86 39.5
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 6.8e-07 57.8 75 37.3
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.6e-06 55.8 123 31.7
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 3.4e-06 55.5 59 55.9
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 4.4e-06 55.1 49 46.9


User provided reference genes

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