Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 6.0e-283 976.9 496 100.0
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 1.9e-225 785.8 498 80.9
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.4e-223 779.6 499 80.2
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 8.0e-203 710.7 494 73.9
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 2.6e-185 652.5 495 69.3
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 2.6e-185 652.5 489 68.9
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.7e-185 651.4 456 73.9
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.7e-184 649.8 482 69.7
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.2e-184 649.4 456 73.9
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.2e-184 649.4 487 69.6
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 8.3e-184 647.5 515 67.8
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 9.2e-183 644.0 470 70.0
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.0e-182 642.9 495 68.1
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.7e-182 642.5 483 68.9
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.3e-181 640.2 469 71.0
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.8e-181 638.6 477 70.0
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 5.0e-181 638.3 514 65.6
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 5.0e-181 638.3 472 70.1
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 5.0e-181 638.3 504 67.5
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.5e-180 636.7 470 69.4
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.5e-180 636.0 496 67.1
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 3.3e-180 635.6 456 71.7
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 2.1e-179 632.9 501 66.3
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 4.7e-179 631.7 471 69.2
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 2.3e-178 629.4 488 65.8
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 8.9e-178 627.5 495 67.1
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.6e-177 625.9 491 68.0
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 4.4e-177 625.2 489 66.7
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 1.3e-176 623.6 490 67.8
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.9e-176 622.5 487 67.1
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 6.4e-176 621.3 482 65.8
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.4e-175 620.2 497 66.2
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.4e-175 619.4 492 66.1
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 4.1e-175 618.6 482 66.0
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 9.2e-175 617.5 474 68.4
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-174 617.1 499 64.3
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 1.6e-174 616.7 483 67.5
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.6e-174 616.7 501 65.5
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 2.7e-174 615.9 492 65.7
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.3e-173 613.6 492 65.4
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 2.3e-173 612.8 518 63.3
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.3e-173 612.8 469 68.0
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 2.3e-173 612.8 455 68.6
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 3.0e-173 612.5 521 63.7
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 3.9e-173 612.1 488 65.4
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 3.9e-173 612.1 462 67.3
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 6.6e-173 611.3 492 65.4
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.1e-172 610.5 511 64.4
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 7.3e-172 607.8 462 67.7
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 3.6e-171 605.5 469 67.4
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 6.2e-171 604.7 475 64.6
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 5.2e-170 601.7 458 68.1
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 5.2e-170 601.7 469 66.3
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 6.8e-170 601.3 498 64.5
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 8.9e-170 600.9 474 66.2
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.2e-169 600.5 523 61.4
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 5.8e-169 598.2 462 67.3
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 2.9e-168 595.9 492 62.8
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.1e-167 594.0 467 65.7
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 1.9e-167 593.2 489 64.8
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.2e-166 590.5 477 65.8
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 6.0e-166 588.2 494 62.8
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.0e-165 587.4 486 64.6
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.0e-165 587.4 482 64.7
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 1.3e-165 587.0 452 66.8
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 3.9e-165 585.5 451 66.3
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 3.9e-165 585.5 494 62.6
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 6.6e-165 584.7 470 64.5
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 6.6e-165 584.7 503 63.8
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 6.6e-165 584.7 470 63.8
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 8.6e-165 584.3 497 63.0
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.9e-164 583.2 495 61.2
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.9e-164 583.2 495 61.2
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 3.3e-164 582.4 483 63.6
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.6e-163 580.1 462 64.5
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-163 580.1 426 70.2
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.8e-162 576.6 496 61.5
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 2.3e-162 576.2 470 63.0
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.1e-162 575.9 470 63.0
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 5.2e-162 575.1 495 61.0
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 5.2e-162 575.1 495 61.0
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 6.8e-162 574.7 494 61.9
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 4.4e-161 572.0 470 61.9
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 9.8e-161 570.9 470 61.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.2e-160 569.7 498 60.0
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.1e-154 550.8 537 56.8
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.2e-152 543.1 418 67.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 4.9e-152 542.0 448 64.5
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.1e-150 536.6 418 66.0
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 2.7e-150 536.2 470 60.2
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.3e-148 528.1 493 59.2
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 2.4e-146 523.1 559 53.5
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 1.9e-143 513.5 495 56.4
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.0e-141 507.7 504 55.4
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.3e-141 507.3 475 58.9
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 6.6e-141 505.0 491 57.0
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.2e-139 498.4 484 58.5
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.8e-138 496.9 372 68.5
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 2.1e-134 483.4 404 61.9
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.7e-134 483.0 392 65.1
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 5.6e-132 475.3 492 55.7
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 1.5e-124 450.7 462 52.8
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 2.5e-119 433.3 358 64.0
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.9e-116 423.7 446 50.9
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 1.9e-103 380.6 268 72.8
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.5e-103 380.2 231 82.3
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 8.5e-96 355.1 256 71.1
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.6e-89 334.3 201 82.1
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 4.5e-89 332.8 202 81.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.0e-88 331.6 238 68.5
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.0e-88 331.6 238 68.5
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 4.2e-87 326.2 269 65.1
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 3.6e-86 323.2 291 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 5.2e-85 319.3 336 51.8
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 3.2e-79 300.1 341 48.4
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 3.7e-75 286.6 200 71.5
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 5.4e-74 282.7 177 79.1
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 2.0e-73 280.8 325 45.5
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 7.7e-73 278.9 224 63.8
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 1.3e-72 278.1 189 74.6
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.6e-68 263.8 212 65.6
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-65 255.0 224 60.3
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.5e-63 247.3 211 60.7
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 4.1e-58 229.9 228 53.9
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.2e-52 211.8 164 66.5
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 1.2e-52 211.8 171 62.6
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.5e-52 211.5 158 66.5
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.0e-40 172.2 177 54.2
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 2.6e-36 157.5 420 27.9
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.0e-32 145.6 484 31.4
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.9e-32 143.7 135 61.5
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.4e-28 130.6 177 44.6
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 5.8e-28 129.8 152 48.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 1.0e-24 119.0 148 44.6
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 9.6e-23 112.5 106 54.7
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.4e-18 97.8 280 32.1
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 4.2e-18 97.1 55 85.5
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 3.3e-15 87.4 55 70.9
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 5.3e-13 80.1 175 35.4
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 9.0e-13 79.3 63 60.3
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.5e-12 77.0 92 46.7
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 1.7e-11 75.1 77 53.2
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 4.9e-11 73.6 149 34.2
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.4e-10 72.0 49 79.6
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.9e-08 63.9 111 37.8


User provided reference genes

Program Settings