Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.8e-134 482.6 253 100.0
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.8e-94 349.7 241 74.3
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 4.1e-94 348.6 244 74.2
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 7.6e-93 344.4 235 74.5
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 9.3e-91 337.4 250 68.4
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 9.3e-91 337.4 250 68.4
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 9.3e-91 337.4 250 68.8
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 5.1e-89 331.6 234 68.4
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.5e-88 330.1 234 69.2
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 6.3e-87 324.7 206 79.6
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 8.2e-87 324.3 244 67.2
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 2.6e-85 319.3 262 63.0
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.3e-84 317.0 235 68.1
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.7e-84 316.6 233 68.2
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 2.2e-84 316.2 233 67.8
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 9.4e-83 310.8 247 65.6
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.4e-81 307.0 231 66.2
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 2.6e-80 302.8 237 64.6
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 3.3e-80 302.4 242 64.0
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.3e-79 300.4 244 63.5
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 2.2e-79 299.7 232 64.7
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 3.7e-79 298.9 241 63.9
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 4.8e-79 298.5 242 62.0
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 4.8e-79 298.5 242 62.4
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 6.3e-79 298.1 235 63.8
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 6.3e-79 298.1 234 62.4
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.4e-78 297.0 247 61.5
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.1e-78 295.8 246 63.0
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 2.0e-77 293.1 233 63.9
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 2.6e-77 292.7 233 60.9
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 4.5e-77 292.0 233 63.9
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 5.9e-77 291.6 241 61.0
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 7.7e-77 291.2 245 59.6
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.0e-76 290.8 230 63.9
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.3e-76 290.4 241 63.1
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.2e-76 289.7 245 59.6
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.2e-76 289.7 246 61.8
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 2.2e-76 289.7 233 63.5
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 2.9e-76 289.3 242 59.9
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 6.5e-76 288.1 243 58.0
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.4e-75 287.0 237 62.4
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.9e-75 286.6 240 60.8
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.6e-74 283.5 231 62.8
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 3.6e-74 282.3 232 60.8
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 7.9e-74 281.2 235 61.7
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 3.0e-73 279.3 239 60.7
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 6.7e-73 278.1 237 60.3
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 6.7e-73 278.1 232 60.3
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 6.7e-73 278.1 207 67.1
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 1.5e-72 276.9 255 56.5
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 3.3e-72 275.8 206 64.6
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.4e-70 270.4 237 58.6
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 3.1e-70 269.2 194 68.6
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 9.1e-70 267.7 227 56.8
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 8.5e-68 261.2 243 58.0
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.1e-67 260.8 253 52.6
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 3.6e-66 255.8 192 63.5
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 1.0e-65 254.2 194 63.4
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 5.2e-65 251.9 236 58.9
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 5.2e-65 251.9 237 51.9
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 5.7e-64 248.4 207 60.4
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 9.7e-64 247.7 225 56.4
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.7e-63 246.9 224 52.2
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 2.8e-63 246.1 210 61.0
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 8.2e-63 244.6 194 61.9
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 7.0e-62 241.5 258 50.8
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 3.5e-61 239.2 184 65.8
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 4.5e-61 238.8 240 56.2
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 4.5e-61 238.8 254 51.6
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.0e-60 237.7 249 49.4
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.7e-60 236.9 238 50.4
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.7e-60 236.9 249 49.4
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 2.2e-60 236.5 249 49.4
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.9e-60 236.1 213 53.1
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.9e-60 236.1 242 48.8
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 3.8e-60 235.7 245 50.2
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 3.8e-60 235.7 245 50.2
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 5.0e-60 235.3 249 49.0
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.5e-59 233.8 194 58.8
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.9e-59 233.4 235 54.0
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 1.9e-59 233.4 248 48.0
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 2.5e-59 233.0 249 48.2
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 5.5e-59 231.9 252 47.6
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 2.1e-58 229.9 252 47.2
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 8.0e-58 228.0 294 43.9
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.0e-57 226.1 261 48.7
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 4.8e-55 218.8 230 51.7
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 9.1e-54 214.5 237 46.4
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.2e-53 214.2 237 48.5
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 4.5e-53 212.2 207 54.1
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 7.7e-53 211.5 231 49.4
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 1.7e-52 210.3 234 46.6
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 2.3e-52 209.9 235 48.9
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.9e-52 209.5 250 47.2
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 3.0e-49 199.5 230 49.1
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-48 196.8 238 44.1
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.6e-48 196.4 180 56.1
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.4e-46 190.7 189 54.0
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-46 189.1 238 41.6
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 2.3e-44 183.3 235 41.3
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 5.6e-43 178.7 235 42.6
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.0e-41 174.5 233 37.3
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.8e-41 173.7 232 42.7
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.8e-41 173.7 232 40.1
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.0e-41 172.9 243 39.5
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.5e-40 170.6 269 40.9
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 5.8e-40 168.7 229 38.0
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-39 167.5 239 41.0
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 4.9e-39 165.6 131 64.1
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 8.3e-39 164.9 165 52.1
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 3.3e-35 152.9 203 43.8
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 8.9e-33 144.8 108 62.0
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 2.0e-32 143.7 115 58.3
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 3.7e-31 139.4 113 60.2
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.4e-30 137.5 152 45.4
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.3e-28 130.2 183 43.2
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 4.3e-27 125.9 243 34.6
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 2.8e-26 123.2 126 49.2
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.1e-25 121.3 151 41.7
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 1.5e-24 117.5 204 35.3
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 3.2e-22 109.8 112 51.8
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 2.1e-21 107.1 107 48.6
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 7.8e-21 105.1 112 49.1
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.1e-19 101.3 113 44.2
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 2.1e-18 97.1 106 45.3
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 2.4e-17 93.6 154 41.6
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 6.8e-17 92.0 127 39.4
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.5e-16 90.9 120 40.8
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.7e-15 87.4 212 27.8
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.1e-14 84.7 171 36.8
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.5e-11 73.6 65 47.7
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 4.3e-11 72.8 69 47.8
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 4.3e-11 72.8 102 41.2
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-10 70.5 114 36.8
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 2.0e-08 63.9 110 38.2
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 7.6e-08 62.0 73 42.5


User provided reference genes

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