Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 4.3e-259 897.5 469 100.0
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.3e-250 869.4 469 96.2
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 2.4e-249 865.1 469 94.7
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 3.8e-247 857.8 469 93.6
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.8e-241 839.0 469 92.5
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.3e-241 837.4 469 92.3
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.8e-239 831.2 469 92.8
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 3.8e-239 831.2 469 91.3
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 8.5e-239 830.1 469 92.1
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 1.1e-238 829.7 469 91.3
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.9e-238 828.9 469 90.8
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 2.5e-238 828.6 469 91.0
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 1.2e-237 826.2 469 91.3
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 3.6e-237 824.7 470 90.6
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 8.0e-237 823.5 470 90.2
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.0e-236 823.2 470 90.4
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.8e-236 822.4 468 91.0
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 2.3e-236 822.0 469 90.4
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 3.0e-236 821.6 470 90.6
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.0e-236 821.6 469 90.8
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.5e-235 819.3 469 90.6
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 1.5e-235 819.3 469 90.4
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 2.6e-235 818.5 469 90.4
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 9.7e-235 816.6 469 90.4
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.7e-234 815.8 469 90.4
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 3.7e-234 814.7 470 89.1
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 4.8e-234 814.3 469 90.0
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 8.2e-234 813.5 506 85.0
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 1.1e-233 813.1 469 90.4
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 1.4e-233 812.8 468 90.6
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.1e-233 811.6 469 89.8
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 4.1e-233 811.2 469 89.1
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 4.1e-233 811.2 469 89.1
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 9.1e-233 810.1 469 90.0
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.6e-232 809.3 469 89.1
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 2.0e-232 808.9 469 88.3
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 7.7e-232 807.0 469 90.4
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.0e-231 806.6 469 88.5
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.7e-231 805.8 471 88.7
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 1.7e-231 805.8 469 88.9
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 8.5e-231 803.5 469 87.8
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 8.5e-231 803.5 469 87.8
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.9e-230 802.4 469 88.7
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.9e-230 802.4 469 87.6
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.9e-230 802.4 468 88.5
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 2.5e-230 802.0 469 88.1
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 2.5e-230 802.0 462 89.8
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 5.5e-230 800.8 468 88.5
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 6.1e-229 797.3 506 82.6
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 8.0e-229 797.0 469 87.4
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 1.4e-228 796.2 493 85.2
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 1.2e-227 793.1 468 86.3
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 2.6e-227 792.0 470 87.2
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 1.7e-226 789.3 469 86.8
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 3.7e-226 788.1 470 87.0
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 1.1e-225 786.6 545 78.0
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 2.7e-224 781.9 449 90.6
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 5.9e-224 780.8 470 87.7
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.1e-221 772.3 469 85.7
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 4.7e-221 771.2 491 83.7
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.8e-220 769.2 469 84.6
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 2.3e-220 768.8 470 86.6
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 5.2e-220 767.7 469 84.4
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.2e-219 766.5 469 84.2
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 1.2e-219 766.5 469 84.2
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 2.0e-219 765.8 492 82.9
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 2.6e-219 765.4 469 84.6
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 7.5e-219 763.8 469 83.6
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 1.3e-218 763.1 469 83.4
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.3e-218 763.1 469 83.4
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 3.7e-218 761.5 469 83.4
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 6.3e-218 760.8 469 83.4
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 6.3e-218 760.8 469 83.4
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.1e-217 760.0 469 83.4
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 1.1e-217 760.0 469 83.2
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.8e-217 759.2 469 83.6
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.8e-217 759.2 469 82.9
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.4e-217 758.8 469 83.2
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 7.0e-217 757.3 469 82.5
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 5.9e-216 754.2 469 83.2
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.3e-215 753.1 470 82.8
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.3e-215 753.1 470 82.8
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.3e-215 752.3 469 82.7
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 7.3e-214 747.3 471 82.4
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 4.7e-213 744.6 441 87.3
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 6.1e-213 744.2 493 78.9
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 2.3e-212 742.3 497 78.3
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 2.7e-208 728.8 418 90.4
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 6.4e-202 707.6 461 82.2
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.4e-201 706.4 470 81.3
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 4.1e-201 704.9 397 91.4
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.5e-198 696.4 418 87.6
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 3.1e-196 688.7 418 85.2
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 3.1e-196 688.7 418 85.2
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 8.3e-194 680.6 469 78.7
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.4e-193 679.1 423 83.5
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 3.3e-190 668.7 383 90.9
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 4.7e-189 664.8 469 71.9
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 3.0e-175 619.0 373 85.5
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.8e-172 609.8 350 88.6
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 3.1e-172 609.0 374 84.5
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.9e-169 599.7 340 93.2
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 5.4e-169 598.2 467 65.7
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 2.8e-165 585.9 469 68.7
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 1.8e-164 583.2 470 62.1
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.8e-164 583.2 365 84.9
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 1.2e-160 570.5 324 94.1
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 3.1e-140 502.7 312 79.8
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.7e-136 489.6 308 85.7
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 2.0e-134 483.4 365 71.2
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 9.4e-129 464.5 324 78.4
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 5.9e-115 418.7 246 90.2
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.2e-91 341.3 182 91.2
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.3e-89 333.2 312 62.8
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.8e-88 330.1 173 93.6
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 4.0e-87 326.2 238 75.6
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.3e-82 311.2 302 57.6
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 1.4e-79 301.2 505 38.2
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 4.3e-73 279.6 210 60.0
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.1e-71 275.0 294 55.1
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 1.9e-68 264.2 160 88.1
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 3.2e-60 236.9 195 69.2
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 7.9e-59 232.3 138 89.9
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.1e-57 228.4 407 41.8
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 3.1e-55 220.3 119 98.3
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 1.8e-47 194.5 332 36.7
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 9.0e-47 192.2 111 91.9
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 3.2e-44 183.7 111 88.3
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.2e-44 183.7 107 79.4
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 5.5e-44 183.0 491 29.9
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 7.1e-44 182.6 105 81.9
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.8e-40 169.9 91 95.6
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.3e-32 142.9 76 92.1
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 5.5e-28 129.8 81 81.5
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 5.5e-28 129.8 74 85.1
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.6e-27 128.3 72 84.7
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.7e-27 127.5 74 83.8
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.0e-26 125.6 72 86.1
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 3.0e-26 124.0 72 84.7
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.2e-24 117.9 99 65.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 3.1e-23 114.0 79 74.7
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.2e-22 112.1 57 87.7
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.1e-20 105.5 57 87.7
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.8e-15 88.2 57 80.7
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.2e-14 85.5 52 84.6
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.0e-13 82.4 46 97.8
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.0e-13 82.4 52 86.5
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 6.5e-13 79.7 74 62.2
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 1.1e-12 79.0 44 90.9
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 7.7e-06 56.2 33 84.8


User provided reference genes

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