Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold186G40233 Striga asiatica HOM05D003079 ORTHO05D003461 3.2e-219 765.0 440 100.0
SGA_v2.0_scaffold7G03549 Striga asiatica HOM05D003079 ORTHO05D003461 3.5e-101 372.9 441 59.6
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 4.6e-61 239.6 539 42.3
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 4.9e-55 219.5 555 38.4
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 1.0e-52 211.8 559 37.2
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 4.3e-51 206.5 504 36.3
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 7.4e-43 179.1 366 40.2
MSTRG.14525 Avicennia marina HOM05D003079 ORTHO05D003461 4.8e-42 176.4 324 46.0
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 1.4e-41 174.9 418 37.8
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 3.1e-41 173.7 526 34.8
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 2.5e-38 164.1 614 31.6
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.0e-36 158.7 618 31.2
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.8e-36 157.9 525 33.9
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 3.0e-36 157.1 358 36.9
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 1.5e-35 154.8 507 33.9
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 3.3e-35 153.7 583 32.1
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 3.3e-35 153.7 601 31.4
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 4.3e-35 153.3 361 37.4
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 1.3e-34 151.8 516 31.0
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.7e-34 150.2 398 36.4
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 1.1e-33 148.7 588 33.3
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 2.4e-33 147.5 480 32.1
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 3.1e-33 147.1 490 33.3
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 6.9e-33 146.0 633 31.6
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 1.2e-32 145.2 370 35.9
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.6e-32 144.1 374 35.3
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 4.5e-32 143.3 374 35.8
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.0e-31 142.1 600 31.0
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.0e-31 142.1 361 35.7
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 1.7e-31 141.4 432 31.7
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.7e-31 141.4 361 34.9
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.1e-30 138.7 374 34.2
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 1.9e-30 137.9 297 38.4
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 1.6e-29 134.8 360 34.2
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 2.7e-29 134.0 393 32.1
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 3.6e-29 133.7 400 33.2
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 6.1e-29 132.9 402 32.1
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.4e-28 131.7 596 30.4
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 2.6e-27 127.5 558 30.3
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 2.6e-27 127.5 558 30.3
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 9.7e-27 125.6 371 34.2
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 9.7e-27 125.6 635 30.2
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 9.7e-27 125.6 632 28.2
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 1.7e-26 124.8 336 34.2
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.2e-26 124.4 534 30.3
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 7.7e-24 115.9 555 27.6
Oeu006261.2 Olea europaea HOM05D003079 ORTHO05D003461 3.8e-23 113.6 302 34.4
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 5.0e-23 113.2 407 29.2
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.9e-22 111.3 601 26.8
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 3.2e-22 110.5 464 30.2
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 7.2e-22 109.4 631 26.9
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 1.6e-21 108.2 598 31.6
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 2.1e-21 107.8 631 26.6
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 2.7e-21 107.5 576 28.5
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 4.7e-21 106.7 373 31.1
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 8.0e-21 105.9 629 26.6
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 1.5e-19 101.7 429 28.2
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.0e-19 101.3 429 28.2
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.0e-19 101.3 435 29.7
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 2.6e-19 100.9 370 30.8
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 4.4e-19 100.1 550 30.9
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 5.7e-19 99.8 370 29.5
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 7.5e-19 99.4 395 31.1
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.3e-18 98.6 400 30.0
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.3e-18 98.6 400 30.0
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 1.3e-18 98.6 356 30.3
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 1.3e-18 98.6 620 27.1
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 3.7e-18 97.1 400 29.8
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 1.8e-17 94.7 406 30.3
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.4e-17 94.4 449 28.3
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 3.1e-17 94.0 361 28.5
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 4.1e-17 93.6 357 31.7
Oeu015272.1 Olea europaea HOM05D003079 ORTHO05D003461 5.3e-17 93.2 112 50.0
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 7.0e-17 92.8 345 31.9
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 1.6e-16 91.7 534 27.5
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 3.5e-16 90.5 450 30.2
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 3.5e-16 90.5 354 28.8
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 7.7e-16 89.4 400 29.5
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 1.0e-15 89.0 355 30.1
Peaxi162Scf00006g00810 Petunia axillaris HOM05D003079 ORTHO05D003461 1.0e-15 89.0 257 32.7
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 1.0e-15 89.0 438 29.5
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 1.7e-15 88.2 505 27.7
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 2.2e-15 87.8 430 28.1
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 2.2e-15 87.8 434 28.6
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 1.1e-14 85.5 585 26.8
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 1.5e-14 85.1 593 25.6
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 1.5e-14 85.1 406 30.8
Aqoxy7G02327 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 2.5e-14 84.3 193 34.2
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 2.5e-14 84.3 597 25.6
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 5.5e-14 83.2 693 28.4
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 7.2e-14 82.8 457 28.0
Actinidia30351 Actinidia chinensis HOM05D003079 ORTHO05D003461 9.4e-14 82.4 113 46.0
COL.COLO4_07790 Corchorus olitorius HOM05D003079 ORTHO05D003461 1.2e-13 82.0 170 32.4
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 3.6e-13 80.5 430 29.8
Actinidia03676 Actinidia chinensis HOM05D003079 ORTHO05D003461 6.1e-13 79.7 75 56.0
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 6.1e-13 79.7 435 29.7
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 6.1e-13 79.7 348 27.6
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 8.0e-13 79.3 371 31.5
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 2.3e-12 77.8 537 28.1
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 3.0e-12 77.4 529 27.2
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 3.0e-12 77.4 532 28.6
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 5.2e-12 76.6 371 29.4
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 5.2e-12 76.6 358 26.0
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 5.2e-12 76.6 365 28.2
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 6.8e-12 76.3 350 27.1
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.5e-11 75.1 375 29.3
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.5e-11 75.1 639 25.4
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 2.0e-11 74.7 427 27.9
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 3.4e-11 73.9 639 25.2
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 3.4e-11 73.9 639 25.2
TAR626G1036 Trochodendron aralioides HOM05D003079 ORTHO05D003461 5.7e-11 73.2 113 41.6
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 7.5e-11 72.8 453 29.1
ATR0751G103 Amborella trichopoda HOM05D003079 ORTHO05D003461 1.3e-10 72.0 113 39.8
PGSC0003DMG400029886 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.2e-10 71.2 78 51.3
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 6.3e-10 69.7 356 33.7
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.4e-09 68.6 343 30.6
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 5.4e-09 66.6 351 29.1
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 1.2e-08 65.5 439 27.8
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.2e-08 65.5 267 29.6
Zm00001eb101670 Zea mays HOM05D003079 ORTHO05D003461 1.2e-08 65.5 333 27.9
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 2.0e-08 64.7 457 28.4
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 5.9e-08 63.2 550 25.8
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 5.9e-08 63.2 433 26.8
Oeu062673.1 Olea europaea HOM05D003079 ORTHO05D003461 5.9e-08 63.2 327 29.4
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 1.0e-07 62.4 434 25.6
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 3.8e-07 60.5 527 27.1
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 5.0e-07 60.1 522 27.4
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 5.0e-07 60.1 440 27.0
Os09g0481300 Oryza sativa ssp. japonica HOM05D003079 ORTHO05D003461 5.0e-07 60.1 255 28.6
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 1.1e-06 58.9 227 31.7
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 1.1e-06 58.9 377 28.9
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.9e-06 58.2 551 25.8
PGSC0003DMG400028881 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.9e-06 58.2 57 56.1
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 3.2e-06 57.4 440 27.5
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 3.2e-06 57.4 527 25.2
unitig_744.g24499 Utricularia gibba HOM05D003079 ORTHO05D003461 3.2e-06 57.4 469 24.9
HanXRQChr05g0160341 Helianthus annuus HOM05D003079 ORTHO05D003461 4.2e-06 57.0 208 32.2


User provided reference genes

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